PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001164.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 271aa    MW: 31331.2 Da    PI: 9.5959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001164.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.7e-192269148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  FANhyb_rscf00001164.1.g00006.1 22 KGPWTSEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                                    79********************************************97 PP
2Myb_DNA-binding51.72.1e-1675119147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  FANhyb_rscf00001164.1.g00006.1  75 RGQITPHEESIILQLHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                                     7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7561773IPR017930Myb domain
SuperFamilySSF466893.24E-3019116IPR009057Homeodomain-like
SMARTSM007171.4E-162171IPR001005SANT/Myb domain
PfamPF002491.4E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-242376IPR009057Homeodomain-like
CDDcd001674.01E-122469No hitNo description
PROSITE profilePS5129419.32474124IPR017930Myb domain
SMARTSM007171.3E-1474122IPR001005SANT/Myb domain
PfamPF002491.2E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2477123IPR009057Homeodomain-like
CDDcd001673.02E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MYCGMMAAHM GWGIIEEEGW RKGPWTSEED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILQLH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKVPSDA SEKAKSRLLR RQKLHQQQQQ QQQQQQQQQL QLINQADMKR IMAFLDENDT  180
KISSWPPQAA QGKQDTTSTT AYPNHTCTEE QGFFYSMLNG NVPHVVEASS SEDSFLWDGL  240
WNLDDVHGNF TTSACATGKA STFHNFVVPF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272212427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296547.11e-179PREDICTED: myb-related protein 305 isoform X1
TrEMBLA0A2P6QRR51e-176A0A2P6QRR5_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004296547.11e-179(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-90myb domain protein 305