PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001050.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 658aa    MW: 74030 Da    PI: 7.5149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001050.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07213233526
                                     --SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                     +C f+++ G C +G+rC++ H+
  FANhyb_rscf00001050.1.g00001.1 213 ICTFYQK-GACAFGSRCRYEHV 233
                                     7******.***********997 PP
2zf-CCCH185.1e-06323345326
                                     S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                     +++C+ fa+ G C++G++C+  Hg
  FANhyb_rscf00001050.1.g00001.1 323 RAICS-FAAAGNCPRGEKCPHVHG 345
                                     78999.*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-4181206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6184205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.084185207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784208235IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-4210234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5210232IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4213233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056320347IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-4321346IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.32E-13380453No hitNo description
Gene3DG3DSA:3.30.40.107.2E-10382448IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.04E-5388448No hitNo description
PROSITE profilePS5008912.43389447IPR001841Zinc finger, RING-type
PfamPF000976.8E-7389446IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.4E-7389446IPR001841Zinc finger, RING-type
PROSITE patternPS005180413422IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010310.465476505IPR000571Zinc finger, CCCH-type
SMARTSM003569.8476504IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MQKSGCLMCS IRDFQVFMSS IPIDEHVQER FVPQVLGASQ YHKFEVMMNR HIEVSVSATD  60
VCTVKRCGFP SVCHRTAPAR ERRHPSRLQQ LPRPLSIPGE SAEFQFSGQI IQNFKQRQSG  120
RKTGIRRTRR GWKVVGEAAG VCWGGGAPSP APYGGKQREI RTVLRVIALE RIVEKEFQEH  180
GSGVLCKFFA HGACLKGEHC EFSHDWKDPS NNICTFYQKG ACAFGSRCRY EHVKASRAQS  240
SGSSSSANSH QSLAFDSGLA HPSRTASSGV ALVPGTLSEL SAFSSPFLPP PKPAWSDSLD  300
DGDFDHSEDN DVEETRNARP ADRAICSFAA AGNCPRGEKC PHVHGDICPS CGKHCLHPYR  360
PVEREEHMRM CEEKHKQLEA LKRSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS  420
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY NSKEEKEEIV DSYKARLRSI  480
DCKHFDFGNG NCPFGTSCFY KDEIDKYVMV CFAEVINIFQ SHTVKPGSYV WKFHRPPPRR  540
CDIVRMDSLY EMFDRLEELE DYTPGDLDIP LEVQLLLMQL GLCPSDSKSL KSSYLKLKST  600
SFEHAYRDGR LEEVVLRHLG NEDGQTVIAA DIRLSDFLGD LRISGYRADF CSEGFVVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266TVKRC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468814.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1
TrEMBLA0A2P6S7G20.0A0A2P6S7G2_ROSCH; Putative transcription factor C3H family
STRINGXP_004306527.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-128C3H family protein