PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00001048.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 275aa MW: 30502.4 Da PI: 8.6446 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4.2e-10 | 57 | 81 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f r G C+yG+ C +aHg FANhyb_rscf00001048.1.g00002.1 57 YKTRLCYNFKR-GRCHYGEACLYAHG 81 9**********.*************9 PP | |||||||
2 | zf-CCCH | 21.1 | 5.3e-07 | 112 | 136 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +lC+ f+ G C yG++C+F H+ FANhyb_rscf00001048.1.g00002.1 112 GVKLCKMFSNQGRCEYGEKCRFRHV 136 678*******************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-13 | 52 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-8 | 54 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 56 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 57 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-7 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0033 | 112 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 113 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-7 | 114 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MSNSRSSCQF FTPFLKEGEE FGAVSDIEHH QAFKKPRISE VGSDSTMAGR RYRSLHYKTR 60 LCYNFKRGRC HYGEACLYAH GVEELRNTLG GSQNEKGVLG RTEYGNHGIC DGVKLCKMFS 120 NQGRCEYGEK CRFRHVILKR IKDDESVITI SAGGSEGSVD GGCGQFGGKR SLGLDVDTNG 180 GSGGRHFRQQ GSVAAGRGML SNTCIASGSF AHGHAVLRKL CGDTTVETKC SKTCTISREM 240 QVRDGKFDWN ELEKMSRIYA DWIEEIPLVH RKVQC |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305323.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2 | ||||
TrEMBL | A0A2P6RWC1 | 1e-149 | A0A2P6RWC1_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004305323.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15275 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-13 | C3H family protein |