PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000964.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 430aa    MW: 46682.9 Da    PI: 5.8664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000964.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10271319355
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  FANhyb_rscf00000964.1.g00002.1 271 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319
                                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.52E-11266323No hitNo description
SuperFamilySSF474596.41E-17266336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16269336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7271319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGSHDNEDMG FQHRNEGSLN CPSSGMSTNP LPEKVSRMAM SSGSIFKPSN APDPFFGSGW  60
DPLVSLSQSD NFGGSSVASQ SEFTNPPYPI AMETQGMSST SHLVQYPSDS SYVEMVPKLP  120
CFGSGSFSEM VGSFGLPECA GISNPGCVAN YNPNRDGGID RTSTMGAQSH DDRQISEEGA  180
LGSSPNGKRR KRVPESSPNK NAEGEVNKDM SGESSDYLKE QDEKKTKLEE NTAANLRGKQ  240
AGKQTKDTSQ SGDAAKDSYI HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK  300
ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPEVNIDI ERILSKDIMN SRNGSAAIFG  360
FSPGMNSSHP YPHGMFQGTL PNMPSTAPQF PSMPRTVMDN ELQGLFHMGF DSSSNIDSLG  420
QNASRLKPEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290997.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A2P6Q1500.0A0A2P6Q150_ROSCH; Putative transcription factor bHLH family
STRINGXP_004290997.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.16e-91bHLH family protein