PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000909.1.g00009.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 714aa MW: 80947.9 Da PI: 5.2815

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000909.1.g00009.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.4	2.6e-09	59	122	2	79
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 Y++YA+ +GFs+ + + +++k +g i++ +f Cs+e +r+++ ++ C+a+l+v++++ ++w+ t FANhyb_rscf00000909.1.g00009.1 59 LYDAYARCAGFSTHVGQFTRNKPDGPIVTWEFACSREVFRKKNVES--------------CNAMLRVERKDANTWVAT 122 69***************************************99887..............999999999888888755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-6	59	120	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-30	243	335	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-10	509	554	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.214	520	556	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-7	531	558	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MDSEIFLDVE VEDRESDKGV KQNANDNFAG REIITQDEDG NTKPYVGMEF ESEDAAKALY 60 DAYARCAGFS THVGQFTRNK PDGPIVTWEF ACSREVFRKK NVESCNAMLR VERKDANTWV 120 ATKHFAGATK NTAETLDVAS DAYVSMDGNH APYEPNRGGR SVSPVEPNPP ARNVGPINYT 180 GPSSRKRTLG RDAQNLLNYF KKMQAENPGF YYAIQLDDEN RMTNVFWTDA RSRTAYNYFG 240 DAVIFDTMYR PNQYQVPFAP FTGVNHHGQM VLFGCALLLD ESESSFTWLF KTWLSAMNDR 300 PPISITTDQD RAIQVAVAQV FPDTRHCICK WHILREGQER LAHIYLANPS FYGELYSCIN 360 FSEKIEDFES SWLSLLDRYD LRRNDWLQAV YNARKQWAPV YFRGTFFAAI SSNQGVRSFF 420 DGYVNQQTSI PLFFKQYERA LEHALEKEIE ADYDTICTTP VLKTPSPMEQ QAANLYTKKV 480 FAKFQEELVE TFVYTANRID EDGLVSKYRV AKYEHDDKAY IVELNVSEMK ASCSCQMFEH 540 AGILCRHILT VFTVTNVLTL PSQYILKRWT RNAKSWVGVD EQISDPQGVE ILTVRFNNLC 600 QEAIKYAEEG AVAVETYNAA MIALRDSGKR IADMKKNVAK AAPPSSHDSG SIQEESIKKV 660 PLAFGEMVPP LWPWQEALPH RFNLNDVGVP VTGINQPSMA GSIQPDGGHP DNTV

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MDSEIFLDVE VEDRESDKGV KQNANDNFAG REIITQDEDG NTKPYVGMEF ESEDAAKALY  60
DAYARCAGFS THVGQFTRNK PDGPIVTWEF ACSREVFRKK NVESCNAMLR VERKDANTWV  120
ATKHFAGATK NTAETLDVAS DAYVSMDGNH APYEPNRGGR SVSPVEPNPP ARNVGPINYT  180
GPSSRKRTLG RDAQNLLNYF KKMQAENPGF YYAIQLDDEN RMTNVFWTDA RSRTAYNYFG  240
DAVIFDTMYR PNQYQVPFAP FTGVNHHGQM VLFGCALLLD ESESSFTWLF KTWLSAMNDR  300
PPISITTDQD RAIQVAVAQV FPDTRHCICK WHILREGQER LAHIYLANPS FYGELYSCIN  360
FSEKIEDFES SWLSLLDRYD LRRNDWLQAV YNARKQWAPV YFRGTFFAAI SSNQGVRSFF  420
DGYVNQQTSI PLFFKQYERA LEHALEKEIE ADYDTICTTP VLKTPSPMEQ QAANLYTKKV  480
FAKFQEELVE TFVYTANRID EDGLVSKYRV AKYEHDDKAY IVELNVSEMK ASCSCQMFEH  540
AGILCRHILT VFTVTNVLTL PSQYILKRWT RNAKSWVGVD EQISDPQGVE ILTVRFNNLC  600
QEAIKYAEEG AVAVETYNAA MIALRDSGKR IADMKKNVAK AAPPSSHDSG SIQEESIKKV  660
PLAFGEMVPP LWPWQEALPH RFNLNDVGVP VTGINQPSMA GSIQPDGGHP DNTV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306439.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2P6SBH8	0.0	A0A2P6SBH8_ROSCH; Putative transcription factor FAR family
STRING	XP_004306439.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]