PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000900.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WOX
Protein Properties Length: 296aa    MW: 32502.8 Da    PI: 6.7698
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000900.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-192586257
                                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                    ++R+t+t++q+++L+el+++   r psae+++++  +l    +++ ++V++WFqN++a+e++
  FANhyb_rscf00000900.1.g00002.1 25 STRWTPTTDQIRILKELYYNkgVRSPSAEQIQRICLQLkrygKIEGKNVFYWFQNHKARERQ 86
                                    58****************97689*************************************97 PP
2Wus_type_Homeobox111.54.5e-362488265
               Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                    ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri  +L++yGkie+kNVfyWFQN+kaRerqk+
  FANhyb_rscf00000900.1.g00002.1 24 SSTRWTPTTDQIRILKELYYnKGVRSPSAEQIQRICLQLKRYGKIEGKNVFYWFQNHKARERQKK 88
                                    789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-111893IPR009057Homeodomain-like
PROSITE profilePS5007110.1222187IPR001356Homeobox domain
SMARTSM003890.00182391IPR001356Homeobox domain
CDDcd000864.27E-62688No hitNo description
Gene3DG3DSA:1.10.10.602.1E-62686IPR009057Homeodomain-like
PfamPF000461.9E-162686IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEPQPTEDGN RAAGVSANMV CRQSSTRWTP TTDQIRILKE LYYNKGVRSP SAEQIQRICL  60
QLKRYGKIEG KNVFYWFQNH KARERQKKRF TSDVHVPMQR SGLVGNANCT NWKPEDQYMN  120
MNNKYSNICQ GVSSAPASAS SAGGVIAFNG QMGNCGGYGS MNMEKSFRDC SISAGEGTGT  180
TAAGVGGSLG HSFGSWVGGG VDPYSCSSYT SGTSTTFFDM KEQTFMEEEE EYHQEIETLP  240
LFPMHGEEFF GNIKTSSEGG SGYGYYSGSW GGYNGGARTS LELSLNSYGY NTLNYH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289091.10.0PREDICTED: protein WUSCHEL
SwissprotQ6YBV13e-68WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A2P6RLV61e-145A0A2P6RLV6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004289091.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-36WOX family protein