PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000872.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 192aa    MW: 21981.2 Da    PI: 5.288
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000872.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.51.9e-1571128562
                                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                     +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l+++++  +++ +e
  FANhyb_rscf00000872.1.g00003.1  71 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHMSESHDRVLQE 128
                                     689***************************************9999999888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1467131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.79569132IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-1471121No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-1271144No hitNo description
PfamPF001703.0E-1371129IPR004827Basic-leucine zipper domain
CDDcd147023.17E-1772123No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MQPAEATGLP YLVPSSSLSS PYSPQFSMMS TTTQIPQEVN NNNNPQQPSS FSSNSTSDEA  60
DEQQLSLINE RKQRRMISNR ESARRSRMRK QKHLDELWSQ VVWLRNENHQ LVDKLNHMSE  120
SHDRVLQENA QLKEEASELR EMLSDLQLHS PNSNYHPSLR DQLEVDVPCN TAYLRAESSN  180
QPITTSSMDL LG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024185050.11e-115basic leucine zipper 43-like
SwissprotQ9FMC27e-41BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2P6S3I81e-114A0A2P6S3I8_ROSCH; Putative transcription factor bZIP family
STRINGXP_004304176.14e-99(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-48basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]