PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000804.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 297aa    MW: 33231.2 Da    PI: 9.8312
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000804.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-082468345
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                    +WT  E + + +a +++ ++   +W+++a++++ g+t  +++  + 
  FANhyb_rscf00000804.1.g00005.1 24 KWTLAENKMFENALALHDKEtpdRWHKVAEMIP-GKTVGDVVKQYK 68
                                    8*****************99*************.****99998875 PP
2Myb_DNA-binding46.48.8e-15132176347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT++E++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  FANhyb_rscf00000804.1.g00005.1 132 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 176
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.0192075IPR017884SANT domain
SMARTSM007177.7E-92173IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-102478IPR009057Homeodomain-like
CDDcd001672.83E-72470No hitNo description
PfamPF002493.5E-62468IPR001005SANT/Myb domain
PROSITE profilePS5129420.945125181IPR017930Myb domain
SuperFamilySSF466891.2E-16127181IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-18128180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.8E-12129175IPR009057Homeodomain-like
SMARTSM007171.1E-12129179IPR001005SANT/Myb domain
PfamPF002491.7E-12132176IPR001005SANT/Myb domain
CDDcd001675.54E-11132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGILSPSSYF SASNWLLEET KSVKWTLAEN KMFENALALH DKETPDRWHK VAEMIPGKTV  60
GDVVKQYKEL EADVGKIEAG LVPIPGYGTS PFTLEWVNRH GYDVGFKQTY GIGGKKSSST  120
RPADHERKKG VPWTEDEHKL FLMGLKKYGK GDWRNISRNF VVTRTPTQVA SHAQKYFIRQ  180
HSGGKDKRRA SIHDITTVNL SDTCRTPSPD NKPPSPDHHH SSAFSQQPNS ARIPPFQWQQ  240
GGNGANMAFG QAHGNLFMSN THGIGSYGLN KSSVHESYYA PQNLAFQMQS AHHYLHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1425901176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294268.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-132DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P6QJQ00.0A0A2P6QJQ0_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004294268.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-103Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]