PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000794.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 419aa    MW: 46463.2 Da    PI: 7.607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000794.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  FANhyb_rscf00000794.1.g00002.1 14 RGPWSPEEDSKLKSYIELHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                    89*********************************************97 PP
2Myb_DNA-binding37.64.9e-1269111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +++eEd l+  +    G++ W+ Ia+ ++ gRt++++k++w++
  FANhyb_rscf00000794.1.g00002.1  69 GGFSEEEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.885962IPR017930Myb domain
SuperFamilySSF466894.9E-2611109IPR009057Homeodomain-like
SMARTSM007171.4E-121364IPR001005SANT/Myb domain
PfamPF002491.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-241569IPR009057Homeodomain-like
CDDcd001671.25E-91662No hitNo description
PROSITE profilePS5129421.76863117IPR017930Myb domain
SMARTSM007173.3E-1167115IPR001005SANT/Myb domain
PfamPF002498.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2370117IPR009057Homeodomain-like
CDDcd001672.65E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKSYIE LHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRKEHQAAAR RSAAGLKQQE IIKRGLIISN GNNNSMVNNH VAAADSQNPY WPELPVIQGP  180
SIPNYSSPNQ EVAVPSFNDH ASIRKLLIKL GGRFHSHQDN VVQPKIQDVY SLNVNIQLPV  240
DDQFPSSTQQ IYHEKSAANM HSSASPIATV ASNNISSPAQ FAQMNDYNNH MGNAGDGDAM  300
NMFQGGQSSH YLLSNELKDM VYNIDPEKLD GLEFLYSDDI MIMMNDRPIS STTSTNTSYG  360
TDQSTIGWSG PEQMQLVYPP PPLAASGSDY HEGMQRLIMP QEQCANFCGL SSYPGVGVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292782.10.0PREDICTED: transcription factor RAX3-like
TrEMBLA0A2P6Q1270.0A0A2P6Q127_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004292782.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-79myb domain protein 84