PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000783.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 840aa MW: 96033.5 Da PI: 8.0864

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000783.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.3e-21	60	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgk 75 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ +++++++k rr+r+++r+gC+a ++++k++ + + FANhyb_rscf00000783.1.g00001.1 60 EYYSEFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPSKTSNESKPRRNRKSSRCGCQAYMRISKTTelgSLE 138 69***********9998877356667999*************9*******************9988889 PP FAR1 76 wevtkleleHnHela 90 w+vt + ++HnHel FANhyb_rscf00000783.1.g00001.1 139 WRVTGFANHHNHELL 153 *************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-18	60	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-20	276	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	554	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.9E-8	558	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-5	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence Send to blast
MNITSIYLHY DDPSDRQSFS LDDTSSSEES LDETRLSLET TNDVIPYIGK RFATHDAAYE 60 YYSEFAKQCG FSIRRHRTEG KDGVGKGLTR RYFVCHRAGN TPSKTSNESK PRRNRKSSRC 120 GCQAYMRISK TTELGSLEWR VTGFANHHNH ELLEPNQVRF LPAYRTISES DKSRILMFAK 180 TGISVQQMMR LMELEKCVEP GSLPFTEKDV RNLLQSFRKL GPEEESIDLL KMCRNIKEKD 240 RNFKFEYKID SKNRLENIAW SYASSVQSYE IFGDAVVFDT THRLTAFDMP LGIWVGINNY 300 GMPCFFGCVL LREESVRSFS WALKAFLGFM HGKAPQTILT DQNLFLKEAI SADMPTTKHA 360 LCVWMIVAKF PSWFNAVLGE RYNEWKSAFY RIYNLGAIED FELGWTDLVN SFGLQSNRHI 420 VNLYDLRSLW ALPFLRSHFF AGMATIGQSK SINAFIQRFL SAQSRLAHFI EQVAVAVDFK 480 DQAGEQQTMQ QNLQNICLKT GAPMESHAAS VLTPYAFSKL QEQLVLAAHY ASFQMDDGFL 540 VRHHTKGDGG RIVYWVPREG IITCSCHHFE FSGILCRHAL RVLSTGNCFE IPDRYLPVRW 600 RRISTPSAKL LHSVPSDHAE RVELLQRIVS TLVTESAKSR ERLDIATEQE LGRGRKCFKL 660 VCSFYGKCVA ILEEWLQVLR KDTVDCVATT YRTDGRMQVQ CLVDEEISFK RSWDRNGSVN 720 ARTTCSSRSS LPLLKWLPPD LGFVTLNFDV SAHHGKACVG FVIQDRFGNP HMAASKSIGD 780 TNVLVAEATV SREGLHSAYL QQFLETLVQS EELEELYVQK ISCMRRISSS IDYQVWNHQV

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence Send to blast

MNITSIYLHY DDPSDRQSFS LDDTSSSEES LDETRLSLET TNDVIPYIGK RFATHDAAYE  60
YYSEFAKQCG FSIRRHRTEG KDGVGKGLTR RYFVCHRAGN TPSKTSNESK PRRNRKSSRC  120
GCQAYMRISK TTELGSLEWR VTGFANHHNH ELLEPNQVRF LPAYRTISES DKSRILMFAK  180
TGISVQQMMR LMELEKCVEP GSLPFTEKDV RNLLQSFRKL GPEEESIDLL KMCRNIKEKD  240
RNFKFEYKID SKNRLENIAW SYASSVQSYE IFGDAVVFDT THRLTAFDMP LGIWVGINNY  300
GMPCFFGCVL LREESVRSFS WALKAFLGFM HGKAPQTILT DQNLFLKEAI SADMPTTKHA  360
LCVWMIVAKF PSWFNAVLGE RYNEWKSAFY RIYNLGAIED FELGWTDLVN SFGLQSNRHI  420
VNLYDLRSLW ALPFLRSHFF AGMATIGQSK SINAFIQRFL SAQSRLAHFI EQVAVAVDFK  480
DQAGEQQTMQ QNLQNICLKT GAPMESHAAS VLTPYAFSKL QEQLVLAAHY ASFQMDDGFL  540
VRHHTKGDGG RIVYWVPREG IITCSCHHFE FSGILCRHAL RVLSTGNCFE IPDRYLPVRW  600
RRISTPSAKL LHSVPSDHAE RVELLQRIVS TLVTESAKSR ERLDIATEQE LGRGRKCFKL  660
VCSFYGKCVA ILEEWLQVLR KDTVDCVATT YRTDGRMQVQ CLVDEEISFK RSWDRNGSVN  720
ARTTCSSRSS LPLLKWLPPD LGFVTLNFDV SAHHGKACVG FVIQDRFGNP HMAASKSIGD  780
TNVLVAEATV SREGLHSAYL QQFLETLVQS EELEELYVQK ISCMRRISSS IDYQVWNHQV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300021.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2P6PCK3	0.0	A0A2P6PCK3_ROSCH; Putative transcription factor FAR family
STRING	XP_004300021.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]