PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000735.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 787aa    MW: 86572.5 Da    PI: 6.2766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000735.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-08241259625
                                     -SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                                     C+f+a+ G+C +G +C+F+H
  FANhyb_rscf00000735.1.g00004.1 241 CDFYAK-GWCIRGTSCRFIH 259
                                     ******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-6235260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192235262IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5240259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MSGSDDDQSP ALAQLSDEDE DPEEVEQVDQ ELEEQRDEVD MDISNSPIQV HHRGCYSVTD  60
LQLNFNFGNP VLFLIEITVQ FSVGVCGLGE IGNCLGEVDE RREDIKYEGL GGQWGPGSST  120
WGKAEARPPS NILDMAESTS NFNFAGTSNA ALRLKSQKTF AGARNDARIL SGNKTSTHHT  180
DSQDHVKNGI NSKDEMQQVV QSTNDGKQME SRFSRSAASE RGTHIMSPET NDPNKRPAIV  240
CDFYAKGWCI RGTSCRFIHT KDSPNNSHPQ PEGDAAAAAA ASCSKEVKVD EGLRVIPERS  300
RLPGFHDPLA SSSGYSFPLP SHLGVPGHHQ LQSVQYEEPN VGDSADVQKL HLHKDDLVFL  360
TSYKDVGKDD QIRNRPTDKY NNSPNKKGRY STGNTSSHSS SMEDLAGVWR QRVHGDHTSP  420
LVSHSLNTGS NTLIATGLFP SSRISNWTGF SLPASYSNLD AHPVGSRKLL DSNRDYHAYT  480
RPSAFLKSSS PFSSSELNTV SQHSAELKTK ISSNNWEPSV PFRPSCILPS AFLSFSAQQY  540
DPLRGRIELP KLANNSFEAS FYSEGATAGK RLHQKVLPET VGGTRPPACD ADTNSMSSHN  600
TYQEKVLDNS CYTRDPTSPV TETETVGISV VYQNGTLTKD ENPMGHSQVK GSTNPNKISI  660
CGDSRHQSDG SSSHQRDIKV DKFRENNEAE GEHLTDGDVQ QESKEMKQFR GALIELVKEL  720
LKPKWREGSL SKDAHNKIVK KAVDKILSAF QPQQIPPTLE AVTQYLSACR PKISKLVEGY  780
IERYGKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293802.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A2P6Q4770.0A0A2P6Q477_ROSCH; Putative transcription factor C3H family
STRINGXP_004293802.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-38C3H family protein