PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000702.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 371aa    MW: 40933.8 Da    PI: 7.7088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000702.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.22e-29155216159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp ++eitY+g+H+++
  FANhyb_rscf00000702.1.g00006.1 155 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPMILEITYRGRHTCT 216
                                     59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-28149217IPR003657WRKY domain
PROSITE profilePS5081122.825150213IPR003657WRKY domain
SuperFamilySSF1182901.06E-25154217IPR003657WRKY domain
SMARTSM007744.1E-42155217IPR003657WRKY domain
PfamPF031067.3E-27156215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDKYYNMGVN WEQKTTLVNE LTQGRELARQ LQIHLNATST LNPSASSQTA LAREVLIQKI  60
ISSYEKALSM LSSRSSSPPV AVAVEQQHQQ QPTFTVAAAT GVVTIRMANS PPSLNGSPRS  120
EDSDDHKDPS KKRKGLARWT KQVRVTSGMG LEGPLDDGFS WRKYGQKDIL GAKYPRGYYR  180
CTHRNVQGCL ATKQVQRSDE DPMILEITYR GRHTCTQAAS TTVTSPPPKP MSPLPEQKPE  240
PPKINQQPQH NMLLSLPEGL RVITEGLDAS HDRRDELVFS SFNNNYVGNF SPPLTMPTAS  300
TSGTNYFSAL SQQDFGHQNL QISAAAEPHD IISAATSATN SPTVGIDFPF AQADHQILYP  360
NFTFDDPGFF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-191552131474Disease resistance protein RRS1
5w3x_D2e-191552131474Disease resistance protein RRS1
6ir8_A1e-19155215868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308010.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S5SLA90.0A0A1S5SLA9_FRAVE; WRKY transcription factor 59
STRINGXP_004308010.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-54WRKY family protein