PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000666.1.g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 311aa MW: 34937.7 Da PI: 4.3549 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 79 | 129 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k FANhyb_rscf00000666.1.g00008.1 79 RLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 129 5799**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123 | 1.4e-39 | 78 | 165 | 4 | 91 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 rl+++qv++LE+sF+ e+kLeperK la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L k FANhyb_rscf00000666.1.g00008.1 78 XRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQANYNSLKADCDSLCK 156 69***************************************************************************** PP HD-ZIP_I/II 83 eveeLreel 91 e+++L++e+ FANhyb_rscf00000666.1.g00008.1 157 ENDKLKAEV 165 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.35E-18 | 64 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 71 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-16 | 73 | 135 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 79 | 129 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-20 | 79 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.38E-16 | 79 | 132 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 8.2E-16 | 131 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAGGGRVYNS SGGASFLLRN QRGSSASEPL DSLFLSGSSN ASSTSPFLGT SLVLNPYSQL 60 AYSVLSFLID XXXXXXXXRL TADQVQFLEK SFDLENKLEP ERKILLAKDL GLQPRQVAIW 120 FQNRRARWKT KQLEKDYDVL QANYNSLKAD CDSLCKENDK LKAEVLLLSE RLQLKDKERA 180 NSEQSDTNKS HQEPQQMPIA ESVSSEGEVS KLSVVACKED LSSVKSDIFD SDSPHYTDGV 240 HSSLLERDDS SYIFEPDQSD LSQDEEDNLS KSLLPTYIFP KLEDVDYTDP PANSCNFGFP 300 VEDQAFWSWS Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 131 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299399.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A2P6P2E7 | 1e-177 | A0A2P6P2E7_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004299399.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-42 | homeobox 1 |