PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000639.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 673aa    MW: 73722.1 Da    PI: 5.955
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000639.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07277297526
                                     --SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                     +C+ f++ GtC+ Gd C +aHg
  FANhyb_rscf00000639.1.g00002.1 277 PCPEFRK-GTCRQGDACEYAHG 297
                                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.3E-1430154IPR020683Ankyrin repeat-containing domain
PfamPF127964.4E-769138IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-1270149IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.14373143IPR020683Ankyrin repeat-containing domain
SMARTSM002480.007573103IPR002110Ankyrin repeat
CDDcd002049.65E-1075146No hitNo description
PROSITE profilePS500888.843108143IPR002110Ankyrin repeat
SMARTSM002480.85108140IPR002110Ankyrin repeat
SMARTSM003565.4E-5272298IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4277297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.625307331IPR000571Zinc finger, CCCH-type
SMARTSM0035654307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MCSGSKRKPC STDSTMDHEK QEGFRYSFSI LLELAAADDL DGFRSAVEDD GHDVDEASYW  60
YGRRVGSKKM GFEERTPLMI AAMFGSMNVL NYILQTCRVD VNRACGSDRA TALHCAATGG  120
SGASAEVVKV LLAASADASC IDVNGNQAGD LIAPAYSSSF NSRKKALEVM LKGVSGLDEA  180
FDFSEQMARE AEGEDQQEVT TPRASKDGTE RKEYPVDLSL PDIKNGIYST DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGTCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDETGCT RRVCFFAHKT EELRPLYAST GSAVPSPRSF SAGASLDMGS  360
LSPLSLNSPS ILIPSVSTPP MTPTGSRLKS TLSARDLDLD MEFLSLENHR RRQRLIEELS  420
SPSSNWNNGL SSPSAFSASG NRMGELNRIG GVRPTNLEDV FGSMDPTMLP QLQGLSRDTT  480
ASQLQSPTGI QMRQNMNMQL RSSFSGSPSS SPVRGSPLHG FDASGAAAVL SSRSAAFAKQ  540
RSQSFIERSA ANHNYGLSSP ADSGTPKPSN LSNWGSPNGK LDWGIQGEEL NKLRKSASFG  600
YRNNGNSFPT VDEPDVSWVN TLVKDAPSPS RPGPLGFEEQ QQQQQQCHLE NGDAEILSAW  660
VEQLYLEQEQ MVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294290.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2P6QK320.0A0A2P6QK32_ROSCH; Putative transcription factor C3H family
STRINGXP_004294290.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein