PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000563.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 277aa    MW: 32513.2 Da    PI: 8.8792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000563.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-18651147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  FANhyb_rscf00000563.1.g00001.1  6 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 51
                                    899*****************************.***********996 PP
2Myb_DNA-binding54.33.2e-1758101146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     r+++++eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  FANhyb_rscf00000563.1.g00001.1  58 RNPFSEEEEERLLASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 101
                                     789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.789156IPR017930Myb domain
SuperFamilySSF466891.98E-29499IPR009057Homeodomain-like
SMARTSM007172.9E-15554IPR001005SANT/Myb domain
PfamPF002491.1E-17651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-27759IPR009057Homeodomain-like
CDDcd001671.24E-13950No hitNo description
SMARTSM007172.7E-1557105IPR001005SANT/Myb domain
PROSITE profilePS5129418.3957107IPR017930Myb domain
PfamPF002493.0E-1458100IPR001005SANT/Myb domain
CDDcd001673.24E-1160100No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2060105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MCNSTRGHWR PAEDEKLREL VERYGPHNWN AIAEKLQGRS GKSCRLRWFN QLDPRINRNP  60
FSEEEEERLL ASHRIHGNRW AVIARLFPGR TDNAVKNHWH VIMARRGRER SRLHHHLHAK  120
RMNRTTTNAT PPHQVINHNE IPKTSSNYKQ DLQMILSCRH ETMNDSSYIG NYCSATERKF  180
HYHPAAFTHN TTLAPVIPNK YHQFYPNTMH QDKNHEPVEF YDFLQVNTES NRSEVIDINT  240
RKDEEEVDQL EAIRQQEQTK AAGAPFIDFF SGGSVTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-3251066107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299490.10.0PREDICTED: transcriptional activator Myb
SwissprotQ6R0C44e-83MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A2P6P1M00.0A0A2P6P1M0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004299490.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-85myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]