PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000554.1.g00007.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 156aa MW: 16994.6 Da PI: 8.3633

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000554.1.g00007.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l+ +reda++sl+yeAear+rdPvyG+vg+ FANhyb_rscf00000554.1.g00007.1 8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNAAHREDAVTSLAYEAEARLRDPVYGCVGL 86 7**************************************************************************** PP DUF260 80 ilklqqqleqlkaelallke 99 i+ lq +l++l+++l +k+ FANhyb_rscf00000554.1.g00007.1 87 ISILQDRLKKLQTDLYNAKK 106 ************988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.765	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNAAH 60 REDAVTSLAY EAEARLRDPV YGCVGLISIL QDRLKKLQTD LYNAKKDLST YIGPQALMIP 120 VFHPSPQPEM NGGGAMAVPM LGVPTGPQQV PSGYGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	7	124	10	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	7	124	10	127	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460237.1	1e-106	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_011460238.1	1e-106	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_011460239.1	1e-106	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_011460240.1	1e-106	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_011460241.1	1e-106	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-66	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2P6Q5T3	1e-101	A0A2P6Q5T3_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_008371805.1	9e-90	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-69	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]