PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000485.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 35374.2 Da PI: 9.191 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.7 | 2.5e-07 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H FANhyb_rscf00000485.1.g00001.1 133 HYCQVCGKGFKRDANLRMHMRAH 155 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 234 | 257 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + FANhyb_rscf00000485.1.g00001.1 234 YVCKRCNrKQFSVLSDLRTHEKHC 257 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.86E-6 | 131 | 158 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 133 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.8E-7 | 133 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0034 | 133 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 69 | 196 | 229 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 234 | 256 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGAMASMSNV IQEIIVTASS MMFTCQQMAL VAPGNDTRSE PNFTISTAGR SNTRDAGFYP 60 THDQTLDWFS TESYNDCLPR DVISRSHRQV ETKELPPRVQ RNNALQVENP PPENSSYDII 120 ELDAADLLAK YTHYCQVCGK GFKRDANLRM HMRAHGDEYK TSIALSNPLK NNNMNSAMNV 180 NGSSNAESSM KLPRKYSCPQ EGCRWNQKHA KFQPLKSMIC VKNHYRRSHC PKMYVCKRCN 240 RKQFSVLSDL RTHEKHCGDL RWQCSCGTTF SRKDKLMGHV ALFVGHTPVM INSNFPIRHG 300 RAESQAAAGG LMQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294539.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q0WT24 | 1e-100 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A2P6QGQ3 | 0.0 | A0A2P6QGQ3_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004294539.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-100 | C2H2 family protein |