PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000471.1.g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LSD | ||||||||
Protein Properties | Length: 92aa MW: 10075.6 Da PI: 8.1513 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.6 | 4.9e-14 | 3 | 27 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP+GA++V+C++C+tV FANhyb_rscf00000471.1.g00007.1 3 CGSCRRLLTYPPGAKHVQCSCCQTV 27 ************************9 PP | |||||||
2 | zf-LSD1 | 46.1 | 8e-15 | 41 | 65 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C tlL+YP+GApsVRC++C +V FANhyb_rscf00000471.1.g00007.1 41 CDSCTTLLMYPYGAPSVRCSSCSFV 65 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.3E-17 | 1 | 30 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.6E-12 | 3 | 27 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.3E-12 | 38 | 66 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.8E-12 | 41 | 65 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MVCGSCRRLL TYPPGAKHVQ CSCCQTVNFV LEAHQVGQVK CDSCTTLLMY PYGAPSVRCS 60 SCSFVTEVKD HNMRPPWSVQ QGQPTAPSNS VH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294024.2 | 7e-64 | PREDICTED: protein LOL2 | ||||
Swissprot | O65426 | 1e-39 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A2P6Q408 | 8e-57 | A0A2P6Q408_ROSCH; Putative transcription factor Znf-LSD family | ||||
STRING | XP_004294024.1 | 4e-63 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 6e-42 | lsd one like 2 |