PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000471.1.g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LSD
Protein Properties Length: 92aa    MW: 10075.6 Da    PI: 8.1513
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000471.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.64.9e-14327125
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                    Cg+Cr lL YP+GA++V+C++C+tV
  FANhyb_rscf00000471.1.g00007.1  3 CGSCRRLLTYPPGAKHVQCSCCQTV 27
                                    ************************9 PP

2zf-LSD146.18e-154165125
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                    C +C tlL+YP+GApsVRC++C +V
  FANhyb_rscf00000471.1.g00007.1 41 CDSCTTLLMYPYGAPSVRCSSCSFV 65
                                    **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.3E-17130IPR005735Zinc finger, LSD1-type
PfamPF069435.6E-12327IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.3E-123866IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-124165IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MVCGSCRRLL TYPPGAKHVQ CSCCQTVNFV LEAHQVGQVK CDSCTTLLMY PYGAPSVRCS  60
SCSFVTEVKD HNMRPPWSVQ QGQPTAPSNS VH
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294024.27e-64PREDICTED: protein LOL2
SwissprotO654261e-39LOL2_ARATH; Protein LOL2
TrEMBLA0A2P6Q4088e-57A0A2P6Q408_ROSCH; Putative transcription factor Znf-LSD family
STRINGXP_004294024.14e-63(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-42lsd one like 2