PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000469.1.g00013.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ZF-HD

Protein Properties

Length: 277aa MW: 30136.1 Da PI: 8.4374

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000469.1.g00013.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.8	1.1e-32	28	84	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY eC+kNhAa++Gg+avDGC+Efm+s ge+gta+al+CaACgCHRnFHRrev++e FANhyb_rscf00000469.1.g00013.1 28 TVRYGECQKNHAANIGGYAVDGCREFMAS-GEDGTAEALTCAACGCHRNFHRREVDTE 84 79************************9.999*******************9875 PP
2	ZF-HD_dimer	98.5	5e-31	216	267	3	55
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 +vrY eC+kNhAa++Gg+avDGC+Efm+s ge+gta+al+CaACgCHRnFHR FANhyb_rscf00000469.1.g00013.1 216 TVRYGECQKNHAANIGGYAVDGCREFMAS-GEDGTAEALTCAACGCHRNFHRS 267 79************************9.999*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-30	29	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.0E-27	30	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.399	31	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-22	31	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.9E-29	217	267	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.7E-26	218	267	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.766	219	268	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-18	219	267	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MKKQQVVVRR DGSSRRSSSS TSSSVVRTVR YGECQKNHAA NIGGYAVDGC REFMASGEDG 60 TAEALTCAAC GCHRNFHRRE VDTEALVETV TRDSIFRNPQ SLAPKFLLRP SLSARKENDR 120 DTPVFLSPMI KLIRVVEYLM LRPISSYLSE ASPLGPDCFI IEVEACSSCL MLGFIASWAE 180 GGFDPKKLMK KQQVVVRRDG SSRRSSSSTS SSVVRTVRYG ECQKNHAANI GGYAVDGCRE 240 FMASGEDGTA EALTCAACGC HRNFHRSPEG SGHGGCL

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024173860.1	7e-43	mini zinc finger protein 3-like
Swissprot	Q9LJW5	5e-32	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A2P6P2L1	2e-41	A0A2P6P2L1_ROSCH; Putative transcription factor ZF-HD family
STRING	XP_010037168.1	7e-41	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	1e-29	mini zinc finger 1

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]