PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000370.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 419aa MW: 46399.4 Da PI: 6.3233

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000370.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.2	2.2e-42	5	143	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgk 72 ppGfrF Pt+eelv++yL +k++g++ ++++i+ +diy+++PwdLp+ +++++++w+fF++r++++a+g FANhyb_rscf00000370.1.g00001.1 5 PPGFRFYPTEEELVSFYLPHKLDGTRkdvnRVMDRIIPVLDIYEFNPWDLPRnsgeICHGDQEQWFFFIPRQESEARGG 83 9*********************9955532333479999******9546654445778************ PP NAM 73 rknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127 r++r t++gyWkatg+ v+s+ ++ ++glk+t+vfy+grap+g+kt+W m+ey+ FANhyb_rscf00000370.1.g00001.1 84 RPKRLTTTGYWKATGSPSYVYSSsssstNHGAIGLKRTMVFYTGRAPNGSKTEWKMNEYK 143 ******************9766665566*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-45	3	178	IPR003441	NAC domain
PROSITE profile	PS51005	48.116	4	178	IPR003441	NAC domain
Pfam	PF02365	1.5E-21	5	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MEDFPPGFRF YPTEEELVSF YLPHKLDGTR KDVNRVMDRI IPVLDIYEFN PWDLPRNSGE 60 ICHGDQEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVYSSSSSS TNHGAIGLKR 120 TMVFYTGRAP NGSKTEWKMN EYKAIEEDDQ LHAPSSSSNA APAPALRQEF SLCRVYKKSK 180 CLRAFDRRPS GTGDIMRRPT VTVQLPALPQ LGTDHHNEGS TYPTAISHAQ NIIPAAPNSY 240 NVEMERISTL SSSGSSSSGD HGQPSQSGQS TGSLPVAVDN GEPLWELDQL DWQEFSLCRV 300 YKKSKCLRAF DRRPSGTGDI MRRPTVTVQL PALPHLGTDH HNEGSTYPTA ISHAQNIIPA 360 APNSYNVEME RISTLSSSGS SSSGDHGQPS QSGQSTGSLP VAVDNGEPLW ELDQLDWFN

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MEDFPPGFRF YPTEEELVSF YLPHKLDGTR KDVNRVMDRI IPVLDIYEFN PWDLPRNSGE  60
ICHGDQEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVYSSSSSS TNHGAIGLKR  120
TMVFYTGRAP NGSKTEWKMN EYKAIEEDDQ LHAPSSSSNA APAPALRQEF SLCRVYKKSK  180
CLRAFDRRPS GTGDIMRRPT VTVQLPALPQ LGTDHHNEGS TYPTAISHAQ NIIPAAPNSY  240
NVEMERISTL SSSGSSSSGD HGQPSQSGQS TGSLPVAVDN GEPLWELDQL DWQEFSLCRV  300
YKKSKCLRAF DRRPSGTGDI MRRPTVTVQL PALPHLGTDH HNEGSTYPTA ISHAQNIIPA  360
APNSYNVEME RISTLSSSGS SSSGDHGQPS QSGQSTGSLP VAVDNGEPLW ELDQLDWFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-33	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-33	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-33	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-33	4	178	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	4	178	20	168	NAC domain-containing protein 19
3swm_B	4e-33	4	178	20	168	NAC domain-containing protein 19
3swm_C	4e-33	4	178	20	168	NAC domain-containing protein 19
3swm_D	4e-33	4	178	20	168	NAC domain-containing protein 19
3swp_A	4e-33	4	178	20	168	NAC domain-containing protein 19
3swp_B	4e-33	4	178	20	168	NAC domain-containing protein 19
3swp_C	4e-33	4	178	20	168	NAC domain-containing protein 19
3swp_D	4e-33	4	178	20	168	NAC domain-containing protein 19
4dul_A	4e-33	4	178	17	165	NAC domain-containing protein 19
4dul_B	4e-33	4	178	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303531.1	0.0	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A2P6RC90	1e-172	A0A2P6RC90_ROSCH; Putative transcription factor NAM family
STRING	XP_004303531.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-61	NAC domain containing protein 90