PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000331.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 282aa    MW: 32257.7 Da    PI: 4.618
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000331.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-184194356
                                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                    k++++t +q++ Le+ Fe ++++  +++ +LAk+l L+ rqV +WFqNrRa+ k
  FANhyb_rscf00000331.1.g00001.1 41 KKRRLTVDQVQFLEKNFELENKLEPDRKVQLAKELCLEPRQVAIWFQNRRARFK 94
                                    56689***********************************************98 PP
2HD-ZIP_I/II126.51.1e-4041131292
                     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                     kkrrl+ +qv++LE++Fe e+kLep+rKv+la+eL l+prqva+WFqnrRAR+ktkqlEkdy++L+++yd+lk+++++L
  FANhyb_rscf00000331.1.g00001.1  41 KKRRLTVDQVQFLEKNFELENKLEPDRKVQLAKELCLEPRQVAIWFQNRRARFKTKQLEKDYDSLRASYDKLKADHDNL 119
                                     9****************************************************************************** PP

                     HD-ZIP_I/II  81 ekeveeLreelk 92 
                                     +k++ +L++e++
  FANhyb_rscf00000331.1.g00001.1 120 RKQNGNLKNEID 131
                                     ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-192898IPR009057Homeodomain-like
PROSITE profilePS5007116.2613696IPR001356Homeobox domain
SMARTSM003891.6E-1438100IPR001356Homeobox domain
CDDcd000866.20E-163997No hitNo description
PfamPF000461.9E-154194IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-1843103IPR009057Homeodomain-like
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PfamPF021832.7E-1596137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVNFKNVSGG DSMNKSLFHP IDKEENGDDD YEGSHLHQPG KKRRLTVDQV QFLEKNFELE  60
NKLEPDRKVQ LAKELCLEPR QVAIWFQNRR ARFKTKQLEK DYDSLRASYD KLKADHDNLR  120
KQNGNLKNEI DFLKDKLLLR DQGKGNLESN DEGINSPKMD IQVAIPNNAA DVYVPIMVCK  180
QEDASSAKSD VFDSDSPHCT ENLSLLLEPS TTADSSHGFE PADHSDFSQD NEDDNSLTRS  240
FLHLPPPCLL KLEDICYDDP PAISSNFELN PVEDQHYGFW PY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARFKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297340.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022831e-40HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2P6R3B60.0A0A2P6R3B6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004297340.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-34homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]