PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000325.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 1505aa MW: 164326 Da PI: 8.3002

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000325.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.1e-06	651	672	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +f+r G C++G++C+++H++ FANhyb_rscf00000325.1.g00008.1 651 ECFDFLR-GKCSRGGSCRYMHSE 672 788999.************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.23	646	673	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7E-5	646	672	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1505 aa Download sequence Send to blast
MYGQPNYGPP FAQGQTPMPP ANQQRPPPPP PFTAPHNVVT SAAPPQPGPY LYQHGFVPAA 60 HQSPPVPFSG MMTTGPSYGG NTWHNVQCPP TTGNQNFQRT HPPALVTPHA APYPNMSQAA 120 VPHGALPPPP PQAASAQSPA PPLPTAPSPS TSLQNLDPDH GSNKLRLGEM RGMDNEFTAS 180 NNFEHFTSVH EHSHNVQGGS ECEKAGSLAR DGVSSNGSLM LNISSPPPKP SDDIVHKIDS 240 ICQLSAMNEG KIESPSKSSQ IDSSSQPDQF MVSSGYSLPA DSDMEMEDDI TLSDGNQEVH 300 NSSDALNRTS DINHGELDVK KHLHGAQISP EWTDPQGISF EKVPSSLSDC QLIIQGAPSR 360 VDICSTGASE SPLASQQEKS SIPKADDRNK LDASAAAEAT NSDGFSNHIT VNSPFRLLQD 420 YASENSSEDG DVGIPPSSVT TNVKSSAKDA GSQFEIGSKN PCMTDTMSAL QYESRRSKLS 480 LDTKKDVRST DTTLIIESHE AFQGKDALNG SPIDIAFKRD KSQEGKKTKS ECLPKVDEYG 540 RLVREGSSDS NSDGSSYKKR CKRGRSRSRS RSRKRSRSRS RSRSRKRSRS RSRSPLDSRR 600 RRSPPRRREK RNRSPSWSSR NQRGRSRSPT FRRAGEFRDE NKRQDRRHIP ECFDFLRGKC 660 SRGGSCRYMH SEHDRNDGSW RHRNQQKHLE VQSSVKKSRI NEEIEDSSDM RLHGEAKAAT 720 VQVKQTLLGK SEEHSAHNPE SHHPSAEMLS SVDNMKSRGD TSQAIEQSRS INFAGEVQKA 780 YYPSQQMEAS LVSDSPPDRP SKTSPYKVSS IEPAADAILS TQSCPTESSN AQPLSSGQFS 840 SQFLAPKESP LPGFSAANSP YPSKLPPPPP SLSQGTSVAH VPQLHRDYSQ RPPYPVQSIP 900 TGTMHAHAYQ GPLSNQPSQF PVSQESTWPS LPPPPPRPPY DSSLNPGTAA QGASSHFQQN 960 HLAPRSDFGS QSSMRPYGSY PTESPHSKGE FLHQMYPTLS ELPHPLPNRE DFGSGNPSNQ 1020 PFGGPDHMRE DRFTHAPVQN VNPSHSFAQG HTHPQPPPPS QELTRIKMQN FSGDNFPSGE 1080 LLNSSSQIHP HSHNQQPSYG VGDSILGVPG KTGVQYPVGG SILGFPRKDG PMSRYPPDMP 1140 DRSQFSQVPD FGASRIQTHH NPYAATFEQP LSFKFSSNTL IQGKNAPAAN MFDTPVQVPV 1200 DGQGVGSAGS RQTTSSPSSA GAVSQLLLKS VSEQYDPLLD SIEPSGNPLN KHDQSQKHTA 1260 TNDSNMMVRF SGSCEPLDVE ENKKHTEVGH VASATSLDND GYGETADAEV GVVEDESLSN 1320 DDGGANLAVG EMEIDQVKSG GKSRKKKDSR STRLFKSAVA DFVKDLLKPS WRQGNMSKEA 1380 FKTIVKKTVD KVSGAMKSHQ IPKSEAKINH YIDSSQRKLT KLVMVTTFAH PFTYAHLLCV 1440 DLSYELITQH AMAEILTRRY TVFSSWNSSI GIESSRINRE YERTLACHRS RVSSKVNPGG 1500 MSFSQ

Sequence ? help Back to Top

Protein Sequence Length: 1505 aa Download sequence Send to blast

MYGQPNYGPP FAQGQTPMPP ANQQRPPPPP PFTAPHNVVT SAAPPQPGPY LYQHGFVPAA  60
HQSPPVPFSG MMTTGPSYGG NTWHNVQCPP TTGNQNFQRT HPPALVTPHA APYPNMSQAA  120
VPHGALPPPP PQAASAQSPA PPLPTAPSPS TSLQNLDPDH GSNKLRLGEM RGMDNEFTAS  180
NNFEHFTSVH EHSHNVQGGS ECEKAGSLAR DGVSSNGSLM LNISSPPPKP SDDIVHKIDS  240
ICQLSAMNEG KIESPSKSSQ IDSSSQPDQF MVSSGYSLPA DSDMEMEDDI TLSDGNQEVH  300
NSSDALNRTS DINHGELDVK KHLHGAQISP EWTDPQGISF EKVPSSLSDC QLIIQGAPSR  360
VDICSTGASE SPLASQQEKS SIPKADDRNK LDASAAAEAT NSDGFSNHIT VNSPFRLLQD  420
YASENSSEDG DVGIPPSSVT TNVKSSAKDA GSQFEIGSKN PCMTDTMSAL QYESRRSKLS  480
LDTKKDVRST DTTLIIESHE AFQGKDALNG SPIDIAFKRD KSQEGKKTKS ECLPKVDEYG  540
RLVREGSSDS NSDGSSYKKR CKRGRSRSRS RSRKRSRSRS RSRSRKRSRS RSRSPLDSRR  600
RRSPPRRREK RNRSPSWSSR NQRGRSRSPT FRRAGEFRDE NKRQDRRHIP ECFDFLRGKC  660
SRGGSCRYMH SEHDRNDGSW RHRNQQKHLE VQSSVKKSRI NEEIEDSSDM RLHGEAKAAT  720
VQVKQTLLGK SEEHSAHNPE SHHPSAEMLS SVDNMKSRGD TSQAIEQSRS INFAGEVQKA  780
YYPSQQMEAS LVSDSPPDRP SKTSPYKVSS IEPAADAILS TQSCPTESSN AQPLSSGQFS  840
SQFLAPKESP LPGFSAANSP YPSKLPPPPP SLSQGTSVAH VPQLHRDYSQ RPPYPVQSIP  900
TGTMHAHAYQ GPLSNQPSQF PVSQESTWPS LPPPPPRPPY DSSLNPGTAA QGASSHFQQN  960
HLAPRSDFGS QSSMRPYGSY PTESPHSKGE FLHQMYPTLS ELPHPLPNRE DFGSGNPSNQ  1020
PFGGPDHMRE DRFTHAPVQN VNPSHSFAQG HTHPQPPPPS QELTRIKMQN FSGDNFPSGE  1080
LLNSSSQIHP HSHNQQPSYG VGDSILGVPG KTGVQYPVGG SILGFPRKDG PMSRYPPDMP  1140
DRSQFSQVPD FGASRIQTHH NPYAATFEQP LSFKFSSNTL IQGKNAPAAN MFDTPVQVPV  1200
DGQGVGSAGS RQTTSSPSSA GAVSQLLLKS VSEQYDPLLD SIEPSGNPLN KHDQSQKHTA  1260
TNDSNMMVRF SGSCEPLDVE ENKKHTEVGH VASATSLDND GYGETADAEV GVVEDESLSN  1320
DDGGANLAVG EMEIDQVKSG GKSRKKKDSR STRLFKSAVA DFVKDLLKPS WRQGNMSKEA  1380
FKTIVKKTVD KVSGAMKSHQ IPKSEAKINH YIDSSQRKLT KLVMVTTFAH PFTYAHLLCV  1440
DLSYELITQH AMAEILTRRY TVFSSWNSSI GIESSRINRE YERTLACHRS RVSSKVNPGG  1500
MSFSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	582	592	RSRKRSRSRSR
2	584	592	RKRSRSRSR
3	584	601	RKRSRSRSRSPLDSRRRR
4	585	590	KRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301108.1	0.0	PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1
Refseq	XP_011464298.1	0.0	PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1
Refseq	XP_011464299.1	0.0	PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1
TrEMBL	A0A2P6P362	0.0	A0A2P6P362_ROSCH; Putative transcription factor C3H family
STRING	XP_004301108.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7855	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-12	C3H family protein