PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000255.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 393aa    MW: 41701.8 Da    PI: 7.952
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000255.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1294.7e-40662142119
                             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 
                                     ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tg+++++a+++  + s +
  FANhyb_rscf00000255.1.g00011.1  66 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGSGTIPANFTsLNISLR 144
                                     789******************************************************************9998666666 PP

                             TCP  80 ssasnsssg..............................kaaksaakskksqksaasalnlakesrakar 119
                                     ss+s+ s++                              +++++++  + +++s++++l+l++ sr+  +
  FANhyb_rscf00000255.1.g00011.1 145 SSGSSMSAPshlrtsgyfnpnnsssllfsggasqlmeeqQRRRQEMRDQGNNNSSSTTLALDHMSREGTS 214
                                     6666444445555666666666777888888888888754455555777777777778888888885444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.9E-4070219IPR005333Transcription factor, TCP
PROSITE profilePS5136927.63672126IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MIMEGDNENG IRIRPNFPLQ FLDKRKEEEA AASSSYGGAE QPNKAVVVAR SSSGDVSTIP  60
EKKPAPPKRT STKDRHTKVD GRGRRIRMPA TCAARVFQLT RELGHKSDGE TIEWLLQQAE  120
PAVIAATGSG TIPANFTSLN ISLRSSGSSM SAPSHLRTSG YFNPNNSSSL LFSGGASQLM  180
EEQQRRRQEM RDQGNNNSSS TTLALDHMSR EGTSIGRKRR PDEQDLLSSS SSQTSHSQLG  240
NYMLQSSTGS IPASQSTIPA TFWMVANPSS NNNNNNQGQA GNMSGGGGSN AHLHHQDPPM  300
WTFPTINGNH GLHFMNFAPP MAILPSQVQL GTSGLSTGGG GGGGAMADSH LGMLAALNAY  360
RPIIGGGAPA NGQHPSDDAD EGQNDEHSNA SQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297311.10.0PREDICTED: transcription factor TCP15-like
TrEMBLA0A1Q1NA560.0A0A1Q1NA56_FRAVE; PCF transcription factor 7
STRINGXP_004297311.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-47TCP family protein