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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | FANhyb_rscf00000234.1.g00004.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | MYB | ||||||||
| Protein Properties | Length: 223aa MW: 25753.9 Da PI: 8.4724 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 62.3 | 9.9e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd++l+++++ +G++ Wk++a + g++R++k+c++rw +yl
FANhyb_rscf00000234.1.g00004.1 16 RGSWTAEEDQRLAQVIEVYGPRKWKSVATKAGLNRCGKSCRLRWMNYL 63
89********************************************97 PP
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| 2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
FANhyb_rscf00000234.1.g00004.1 69 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114
78999*****************.*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 27.069 | 11 | 67 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.76E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.9E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.8E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 6.38E-11 | 18 | 63 | No hit | No description |
| PROSITE profile | PS51294 | 20.918 | 68 | 118 | IPR017930 | Myb domain |
| SMART | SM00717 | 1.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.0E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 71 | 119 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 2.50E-10 | 73 | 114 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 223 aa Download sequence Send to blast |
MVPLSTRSSK SKEVNRGSWT AEEDQRLAQV IEVYGPRKWK SVATKAGLNR CGKSCRLRWM 60 NYLRPNIKRG NISDQEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLSKKIKH 120 NERPQQQNRL LSEPSNPAAK ELLFSSDPQN VELMENNSVS IGIEDTSNSK REENYFFKSM 180 SFNGSFGDEF LCDGSSAEEG PLNLEWMNRF LEMDESWFTL HGI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h8a_C | 2e-31 | 13 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}. | |||||
| UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004303466.1 | 1e-161 | PREDICTED: transcription factor MYB114-like | ||||
| Swissprot | Q96276 | 2e-51 | MYB23_ARATH; Transcription factor MYB23 | ||||
| Swissprot | Q9SZP1 | 1e-50 | MYB4_ARATH; Transcription repressor MYB4 | ||||
| TrEMBL | F2QKW4 | 1e-143 | F2QKW4_ROSRU; Putative MYB transcription factor | ||||
| STRING | XP_004303466.1 | 1e-161 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF2148 | 32 | 88 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G40330.1 | 9e-54 | myb domain protein 23 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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