PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000227.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 405aa    MW: 44871.4 Da    PI: 7.5546
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000227.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.5e-17313346134
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  FANhyb_rscf00000227.1.g00005.1 313 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 346
                                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.319307343IPR000679Zinc finger, GATA-type
SMARTSM004017.6E-17307357IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14311344IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.55E-15311370No hitNo description
CDDcd002027.21E-14312359No hitNo description
PfamPF003205.3E-15313346IPR000679Zinc finger, GATA-type
PROSITE patternPS003440313338IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNHSNSGEPH QRRQEQVKWR EEELGAVRRR RGGVGPVRAM RGERGRERSL QHHDSKRQLA  60
MKDDDKMITP SFVDEIDCGS FFDNIDDLME DVDSVLGPAP DCNSAFSLWP AAAPLPPPNA  120
AVFSGNGDSD FSSELPVPYE EMVHLEWLSN FVENSEYSGG DLTMNKQQES YSLVNKESSH  180
QQFQTSSPIS VLDSSSSCSG EKNVLEGSIA PGRRGRARSK RPRPATFNPR SAIQLISPAS  240
SVSEIDNPLQ QHSLFAAPKV FSESENFAES RPVVKMLKQA SGEQKKKKRI KLPPQVPGEL  300
DENSPLQGAI RKCLHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV  360
PALHSNSHKK VLEMRTKGGE MVSVQDNSIP ELIPNTNSSI SLDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219223KRPRP
2284291KKKKRIKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307386.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A2P6SJF00.0A0A2P6SJF0_ROSCH; GATA transcription factor
STRINGXP_004307386.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-43GATA family protein