PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000225.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 342aa    MW: 38284.5 Da    PI: 6.6369
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000225.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12205230126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     y   +C+++ +tG+C yGd+CkF+H+
  FANhyb_rscf00000225.1.g00008.1 205 YQPDICKDYKETGYCGYGDSCKFMHD 230
                                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9202235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878204232IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7204231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12205235IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10205230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.5E-13271329IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139202.6E-8281322No hitNo description
SuperFamilySSF578507.07E-13281325No hitNo description
PROSITE profilePS5008910.616282320IPR001841Zinc finger, RING-type
SMARTSM001842.3E-4282319IPR001841Zinc finger, RING-type
CDDcd001623.41E-7282323No hitNo description
PROSITE patternPS005180297306IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTDSGENAEP GEGMFNSCFE LCLSISVAYA IHCSSVFPVC NFFRKPKKNF RKRTAEAEDD  60
EESNSGSAVL PSQRKAARPD GKLFFSSGTS KSSASDDGKV ILEFKSSKEI QVEHDSRATA  120
TLETETEFSR DARAVRERVL KQSEEALKGG GKSTGNEKVY KGIHGYTDHK AGFRRELTVA  180
SEKAGGSHGP LRASAHIRAS TRFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM  240
EREWDEAEKV RKRNLALREA GEEVDDDDGD EDEDDDSLPF ACFICRQPFV DPVVTKCSHY  300
FCEHCALKHH SKNKKCFVCN KPTLGIFNTA HEIRKRIAAE GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-643533710317RING finger protein 113A
5z58_M3e-643533710317RING finger protein 113A
6ff4_t3e-643533710317RING finger protein 113A
6ff7_t3e-643533710317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302580.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_011466432.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-155C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2P6RGH30.0A0A2P6RGH3_ROSCH; Putative transcription factor C3H family
STRINGXP_004302580.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-143C3H family protein