PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000199.1.g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 48887.3 Da PI: 8.4615 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 4.1e-11 | 53 | 77 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p FANhyb_rscf00000199.1.g00013.1 53 EPDCSYYIRTGLCRFGATCRFNHPP 77 789********************97 PP | |||||||
2 | zf-CCCH | 32.2 | 1.8e-10 | 108 | 128 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ FANhyb_rscf00000199.1.g00013.1 108 KYYLKTGTCKFGATCKFHHPR 128 79*****************96 PP | |||||||
3 | zf-CCCH | 29.1 | 1.7e-09 | 152 | 174 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+ ++Ck++H+p FANhyb_rscf00000199.1.g00013.1 152 ECAYYLRTGQCKFASTCKYHHPP 174 7********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3.1e-12 | 309 | 335 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ FANhyb_rscf00000199.1.g00013.1 309 PGQPECQFYMKTGDCKFGAVCRFHHPR 335 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 6e-13 | 355 | 381 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ FANhyb_rscf00000199.1.g00013.1 355 PGEPLCIFYSRYGICKFGPSCKFDHPM 381 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.957 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-7 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 56 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.55 | 98 | 128 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.056 | 108 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 108 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 108 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-4 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.136 | 147 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-5 | 150 | 175 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 152 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 312 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 314 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 354 | 381 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 354 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-10 | 356 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 357 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 359 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MDFDAGIPMS RASAAAPVTD EAPSLSPQDG KWQMNLRSSE TMEPGPYPER AGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERVGQPE CQACIFVKYY LKTGTCKFGA 120 TCKFHHPRDK AGIAGRVALN ILGYPLRPNE IECAYYLRTG QCKFASTCKY HHPPPTNMMV 180 SLSGSPVYPT VQSPTTPGQQ SYPGGVTNWS RASFIPSPRW QGPSSYAPVI VPQGVVSVPG 240 WSAYSGQVGS ISTSEGQQQT VGNSQVYGTS RQREPENLGS QGAYSPYRSG SIPVGFYALP 300 RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP APDCVLSPIG LPLRPGEPLC 360 IFYSRYGICK FGPSCKFDHP MGIFTYNLAA SSSAESPVRR LLGSTSGTTS LNLSSEGLVE 420 AGSAKPRRLS LSEPRQMPSA EENIDTEE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302155.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2P6R534 | 0.0 | A0A2P6R534_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004302155.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |