PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000178.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family YABBY
Protein Properties Length: 1075aa    MW: 123048 Da    PI: 5.6199
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000178.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY190.96.1e-59141772159
                           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkee......lle 73 
                                     d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      + + +hl++s+  +      l +
  FANhyb_rscf00000178.1.g00003.1  14 DHLAPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHHLGHSFFSQpnshnlLDQ 92 
                                     57789*****************************************888877766555435788887666667765555 PP

                           YABBY  74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishrea 152
                                     e    + + +  + +++s+ ++ ++        +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishrea
  FANhyb_rscf00000178.1.g00003.1  93 EIPLMNPTPNFLMNNQTSSLNDFAVRP-RGGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREA 170
                                     556666666666666666666666655.6778899***999************************************** PP

                           YABBY 153 fsaaakn 159
                                     fsaaakn
  FANhyb_rscf00000178.1.g00003.1 171 FSAAAKN 177
                                     ******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-5818177IPR006780YABBY protein
Gene3DG3DSA:3.30.830.104.2E-69210435IPR011237Peptidase M16 domain
SuperFamilySSF634111.61E-45213434IPR011249Metalloenzyme, LuxS/M16 peptidase-like
PfamPF006757.7E-34256384IPR011765Peptidase M16, N-terminal
PROSITE patternPS001430269292IPR001431Peptidase M16, zinc-binding site
Gene3DG3DSA:3.30.830.101.2E-36449612IPR011237Peptidase M16 domain
SuperFamilySSF634111.17E-32450606IPR011249Metalloenzyme, LuxS/M16 peptidase-like
PfamPF161872.6E-81484785IPR032632Peptidase M16, middle/third domain
SuperFamilySSF634115.76E-44608835IPR011249Metalloenzyme, LuxS/M16 peptidase-like
Gene3DG3DSA:3.30.830.105.0E-25651833IPR011237Peptidase M16 domain
PfamPF051934.7E-7790971IPR007863Peptidase M16, C-terminal
Gene3DG3DSA:3.30.830.103.4E-648341073IPR011237Peptidase M16 domain
SuperFamilySSF634112.93E-478511071IPR011249Metalloenzyme, LuxS/M16 peptidase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0007275Biological Processmulticellular organism development
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MSSSNSASST LSLDHLAPSE QLCYVHCNIC DTVLAVSVPC TSLFKTVTVR CGHCTNLLPV  60
NMRGLLLPSP NQFHHLGHSF FSQPNSHNLL DQEIPLMNPT PNFLMNNQTS SLNDFAVRPR  120
GGVADELPRP PVINRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDISHREA FSAAAKNDYC  180
SSLTCVGSLD MASCKGVIPF SMGLCSFWSE DIVIKSPNDK KLYRLITLEN GLTALLLHDP  240
DIYPQPGHTL KGGAFQTKKA AAAMFVGMGS FSDPPEAQGL AHFLEHMLFM GSTKFPDENE  300
YDSYLSKHGG SSNACTREEN TSYHFEVKPE FLKGALTRFS QFFVSPLMKS EAMERELQSI  360
DSEFNRVLQN DFCRLEQLQG HTATPGHPFN NFSRGNKKSL DDAREKGINL RQQIMQMYTD  420
YYHGGLMKLV VIGGEMVSMT IRLASCCIIF EIVGSVYQYI KLLRQVSPQE WIFRELQDIG  480
NMSFRFMQDQ PQDDYAVKLG GNLLRYSAEH VIYGDYVYET WDKELIEYVL GFFRPENMRI  540
DVISKSSFKL ERVNKCAQAL TIPSTVSDFQ CEPWFGSHYT EEDISPSLMN LWKDPPEVDN  600
SLHLPQKNMF IPGDFSIRSD VCCPDSANIS SPRCILDEPL VKIWYKLDST FKQPRVNAYF  660
RINLKGGYDN VKSYVLTELY IELLEDELNE IVYQANVAGL GTHVNGSNDF MELKVYGFND  720
KLPALLSKIL TVTRNFLPTY DRFEVIRERM ERMLKNTNMD PQSHSSYLRR QVLYHKYYDV  780
DEELQVLNSL SVSDMKLFIP ELCSQLYIEG LCHGNLVEEE ALHLSNIFKT NFTVEPLPIE  840
LRHKDHCMCL PPSANLVREA CVKNNSETNS VIELYFQIEI ESTRLRALAK LFMKIVDEPL  900
YDQLRTKEQL GYVVWCGLRE ICRVYGFVFC VESSEYNPIY LQGRVDNFIN GVDLLLHGLD  960
DDSFENYKDG LIANLLERDE TLGHETSRLW EEITNKRYTY DWPKKVAEEV RSLQKEDIIN  1020
FYKTYLQPSS PKCRRLAIRV WGCNTDLKEA EAPPESIQLI QDLAAFKMSS EFYLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3cww_A3e-91213106725970Insulin-degrading enzyme
3cww_B3e-91213106725970Insulin-degrading enzyme
6b70_A3e-9121310679954Insulin-degrading enzyme
6b70_B3e-9121310679954Insulin-degrading enzyme
6b7y_A3e-9121310679954Insulin-degrading enzyme
6b7y_B3e-9121310679954Insulin-degrading enzyme
6b7z_A3e-9121310679954Insulin-degrading enzyme
6b7z_B3e-9121310679954Insulin-degrading enzyme
6bf6_A3e-9121310679954Insulin-degrading enzyme
6bf6_B3e-9121310679954Insulin-degrading enzyme
6bf7_A3e-9121310679954Insulin-degrading enzyme
6bf7_B3e-9121310679954Insulin-degrading enzyme
6bf8_A3e-9121310679954Insulin-degrading enzyme
6bf8_B3e-9121310679954Insulin-degrading enzyme
6bf9_A3e-9121310679954Insulin-degrading enzyme
6bf9_B3e-9121310679954Insulin-degrading enzyme
6bfc_A3e-9121310679954Insulin-degrading enzyme
6bfc_B3e-9121310679954Insulin-degrading enzyme
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCleaves peptide substrates on the N-terminus of arginine residues in dibasic pairs. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300711.10.0PREDICTED: insulin-degrading enzyme-like
SwissprotF4HNU60.0NRDC_ARATH; Nardilysin-like
TrEMBLA0A2P6P8680.0A0A2P6P868_ROSCH; Putative insulysin
STRINGXP_004300711.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-51YABBY family protein