PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000117.1.g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 223aa MW: 24811 Da PI: 6.3669 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.3 | 5.3e-28 | 122 | 209 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 fYn+YA +vGF++r++ ++s+ +g+++ rt+vC+keg+r +k++ +k+ r+ra tr+gCka++ +kk ++g+w+v+k FANhyb_rscf00000117.1.g00006.1 122 FYNAYALRVGFRTRVNDLSRSRVDGSVIARTLVCNKEGYRVADKRD-RKSVRPRAPTRVGCKAMISMKKLSNGNWVVAK 199 ******************************************9999.99****************************** PP FAR1 81 leleHnHela 90 +++eH H+l FANhyb_rscf00000117.1.g00006.1 200 FVKEHAHSLI 209 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-25 | 122 | 210 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MQIKSIKLKY ADFLNLVFDH FVPQLRLKMN DINASLYEGL LILPLLLDSG IDTQTQNGAS 60 DRSADVELRL KNDDAILGTS VEEVSTIGQI EQVDHNSASV EVEADEPYVG QEFESEAAAH 120 AFYNAYALRV GFRTRVNDLS RSRVDGSVIA RTLVCNKEGY RVADKRDRKS VRPRAPTRVG 180 CKAMISMKKL SNGNWVVAKF VKEHAHSLIP GRSENGLNDE SSE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466083.1 | 1e-125 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A251P0W7 | 1e-89 | A0A251P0W7_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5VZA8 | 6e-89 | M5VZA8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218478.1 | 1e-90 | (Prunus mume) | ||||
STRING | EMJ06789 | 1e-89 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-43 | FAR1 family protein |