PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000111.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 955aa MW: 109785 Da PI: 6.9499

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000111.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	2.9e-22	54	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ FANhyb_rscf00000111.1.g00008.1 54 DFYNLYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSDAN-----NPRPETRTGCPAMVVIKLVDSQRWRIV 127 6*******************999**************9988.....9********************** PP FAR1 80 kleleHnHela 90 + el+HnH+++ FANhyb_rscf00000111.1.g00008.1 128 ESELQHNHQVS 138 ******987 PP
2	FAR1	37.1	1.1e-11	383	426	47	90
FAR1 47 ktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+++++++r+etrtgC a++++k+ ++++w++ + el+HnH+++ FANhyb_rscf00000111.1.g00008.1 383 KKSDANNPRPETRTGCPAMIVIKLVDSQRWRIVESELQHNHQVS 426 2456789**********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-20	54	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-20	261	338	IPR018289	MULE transposase domain
Pfam	PF03101	1.3E-9	382	427	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-25	549	641	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.396	835	871	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.3E-4	843	868	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	846	873	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDEYDL EGGHDAGNGE TQCKQVSPQP TVGLEFDSFD EAYDFYNLYG 60 KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKKSDAN NPRPETRTGC PAMVVIKLVD 120 SQRWRIVESE LQHNHQVSPQ IKRFYKSHKK MIIAAKNAQP QPDPVTEVHT IKLYRTSVMD 180 VGCNGCSTLS ATEGLNPIDH SQHLELREGD AHAVYNYFCR MKLTNPNFYY LMDLDDDGRL 240 RNVFWADARS RAAYGYFCDT VAIDTTCLAN KYELPLISFV GVNHHGQSVL FGCGFLGVES 300 VDCYVWMLRA WLKCMLGRPP QVFITDKCKP LQNAVSEMEE VCLNSEPVFD EGDEYDLEGG 360 HDAGNGETQC KQVSPQPTVG FKKKSDANNP RPETRTGCPA MIVIKLVDSQ RWRIVESELQ 420 HNHQVSPQIK RFYKSHKKMI IAAKNAQPQP DPVTEVHTIK LYRTSVRDVG CNGCSTLSAT 480 EGLNPIDHSQ HLELREGDAH AVYNYFCRMK LTNPNFYYLM DLDDDGRLRN VFWADARSRA 540 AYGYFCDTVA IDTTCLANKY ELPMISFFGV NHHGQSVLFG CGFLGVESVD CYVWMLRAWL 600 KCMLGRPPQV FITDKCKPLQ NAVSEVIPEA RHCCCLSYIT QKVPEKLGGL KGYEAIRRHL 660 HKSIYDSLKI AEFETSWAEM IKRHELGNNK WLQQLYEDRQ NWVPVYLKDT FFAGMIPIRK 720 SESLPAFFDG YVHKHTSFKE FVDKYDLALH RKRMKEVVAD QESRTSSFEL KTRCNFEVQL 780 CKVYTKEIFR RFQLEVEGMY SCFNTRQVNV NGPIITYIVK ERVEVEGNEK EVRCYEVLYE 840 TTQVDIRCIC SLFNYKGYLC RHALNVLNYN GVEVIPSRYI LPRWSKDFKH THLLHQGSSS 900 NDVYDPAYWC DHLYKLALPV AEEGAQSEEH YKTTLQALEK LLNKFHLVED TLNVT

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDEYDL EGGHDAGNGE TQCKQVSPQP TVGLEFDSFD EAYDFYNLYG  60
KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKKSDAN NPRPETRTGC PAMVVIKLVD  120
SQRWRIVESE LQHNHQVSPQ IKRFYKSHKK MIIAAKNAQP QPDPVTEVHT IKLYRTSVMD  180
VGCNGCSTLS ATEGLNPIDH SQHLELREGD AHAVYNYFCR MKLTNPNFYY LMDLDDDGRL  240
RNVFWADARS RAAYGYFCDT VAIDTTCLAN KYELPLISFV GVNHHGQSVL FGCGFLGVES  300
VDCYVWMLRA WLKCMLGRPP QVFITDKCKP LQNAVSEMEE VCLNSEPVFD EGDEYDLEGG  360
HDAGNGETQC KQVSPQPTVG FKKKSDANNP RPETRTGCPA MIVIKLVDSQ RWRIVESELQ  420
HNHQVSPQIK RFYKSHKKMI IAAKNAQPQP DPVTEVHTIK LYRTSVRDVG CNGCSTLSAT  480
EGLNPIDHSQ HLELREGDAH AVYNYFCRMK LTNPNFYYLM DLDDDGRLRN VFWADARSRA  540
AYGYFCDTVA IDTTCLANKY ELPMISFFGV NHHGQSVLFG CGFLGVESVD CYVWMLRAWL  600
KCMLGRPPQV FITDKCKPLQ NAVSEVIPEA RHCCCLSYIT QKVPEKLGGL KGYEAIRRHL  660
HKSIYDSLKI AEFETSWAEM IKRHELGNNK WLQQLYEDRQ NWVPVYLKDT FFAGMIPIRK  720
SESLPAFFDG YVHKHTSFKE FVDKYDLALH RKRMKEVVAD QESRTSSFEL KTRCNFEVQL  780
CKVYTKEIFR RFQLEVEGMY SCFNTRQVNV NGPIITYIVK ERVEVEGNEK EVRCYEVLYE  840
TTQVDIRCIC SLFNYKGYLC RHALNVLNYN GVEVIPSRYI LPRWSKDFKH THLLHQGSSS  900
NDVYDPAYWC DHLYKLALPV AEEGAQSEEH YKTTLQALEK LLNKFHLVED TLNVT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292980.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_011459168.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2P6PXR1	0.0	A0A2P6PXR1_ROSCH; Putative transcription factor FAR family
STRING	XP_004292980.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6