PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000104.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 266aa    MW: 30973.6 Da    PI: 4.7724
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000104.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-2067120356
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     k++++t+eq++ Le+ Fe ++++  +++++LAkklgL+ rqV vWFqNrRa++k
  FANhyb_rscf00000104.1.g00008.1  67 KKRRLTAEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 120
                                     56789************************************************9 PP
2HD-ZIP_I/II134.92.8e-4366157192
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                                     ekkrrl++eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++
  FANhyb_rscf00000104.1.g00008.1  66 EKKRRLTAEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLANYDS 144
                                     69***************************************************************************** PP

                     HD-ZIP_I/II  80 LekeveeLreelk 92 
                                     + ke+++L++el 
  FANhyb_rscf00000104.1.g00008.1 145 ILKENQKLKSELV 157
                                     *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.97762122IPR001356Homeobox domain
SMARTSM003897.3E-2065126IPR001356Homeobox domain
PfamPF000461.8E-1767120IPR001356Homeobox domain
CDDcd000863.38E-1867123No hitNo description
SuperFamilySSF466891.07E-1967132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-2268129IPR009057Homeodomain-like
PRINTSPR000313.9E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000313.9E-6102118IPR000047Helix-turn-helix motif
PfamPF021835.0E-16122157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMEPGRLFFD PQQGGGGNML FLGSGDQVFR GSRSMMGMEE TSRRRSFFST QDELYEEEYY  60
DEQMPEKKRR LTAEQVHLLE KSFETENKLE PDRKTQLAKK LGLQPRQVAV WFQNRRARWK  120
TKQLERDYDV LKASYDSLLA NYDSILKENQ KLKSELVDSG DSYFPSSCDV HNYDHPHLPH  180
DDHHCLGLVD GVHLEEEDGS DDGRNYFSDV FTAAAVHQRP EDEVPMGWWD GPNLLGIDLT  240
IFLRLELSYR PEIRPTLISM FLSLLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823115.11e-100PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022834e-69HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2I4EUP81e-98A0A2I4EUP8_JUGRE; homeobox-leucine zipper protein HAT5
STRINGXP_004304607.14e-96(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-69homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]