PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000096.1.g00022.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 321aa    MW: 34699.2 Da    PI: 9.7296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000096.1.g00022.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181661147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  FANhyb_rscf00000096.1.g00022.1 16 KGPWSPEEDEALQRLVQSYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                                    79******************************.***********985 PP
2Myb_DNA-binding51.32.6e-1670112347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     ++T+eEd+ +++a++++G++ W+tI+r +  gRt++ +k++w++ 
  FANhyb_rscf00000096.1.g00022.1  70 PFTPEEDDTIIRAHARFGNK-WATISRLLI-GRTDNAIKNHWNST 112
                                     89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7171166IPR017930Myb domain
SuperFamilySSF466898.99E-3213109IPR009057Homeodomain-like
SMARTSM007175.2E-171564IPR001005SANT/Myb domain
PfamPF002492.8E-181661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-261769IPR009057Homeodomain-like
CDDcd001672.71E-161860No hitNo description
SMARTSM007176.9E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129418.60968117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2270116IPR009057Homeodomain-like
CDDcd001674.62E-1170113No hitNo description
PfamPF002495.0E-1470112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MASSSSTKKA AADRIKGPWS PEEDEALQRL VQSYGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPEVEHRP FTPEEDDTII RAHARFGNKW ATISRLLIGR TDNAIKNHWN STLKRKFSSM  120
SDDMSPDQQP LKRSASVGAG TTVSGLYLNP GSPSGSDLSD SSLPGVVPPS QAAFRPVTIT  180
VAPPVEPVAL AVAVDPPTSL SLSLPGSNEG PTHQRSASGS GSSWIVSPKP QVVHQPQVIQ  240
AQPQEAEAIA VAAARVGKQN SSEVGIDKQF FSAEFLDVMQ EMIRTEVRNY MSGIEHKGMM  300
MHTEAAIRNA VVKRIGISKV E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-401511657158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-401511657158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291065.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231607e-91MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2P6Q0R01e-172A0A2P6Q0R0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004291065.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-67myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]