PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000084.1.g00019.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 519aa    MW: 54731.6 Da    PI: 8.9492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000084.1.g00019.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056284123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C++C+k F r  nL+ H r H
  FANhyb_rscf00000084.1.g00019.1 62 FVCEICNKGFQRDQNLQLHRRGH 84
                                    89*******************88 PP
2zf-C2H211.20.0012138160123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC +C+k +  +s+ k H + +
  FANhyb_rscf00000084.1.g00019.1 138 WKCDKCSKKYAVQSDWKAHSKIC 160
                                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.24E-76184No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
PfamPF121718.3E-56284IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355260103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.24E-7133158No hitNo description
SMARTSM00355150138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MPTDLDNSST ASGEASVSSS GNQTAPAPKP ITKKKRNLPG MPDPDAEVIA LSPKTLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEVSC VHHDPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI  180
THRAFCDALA EESARGPSQT QNVKLNSESD PKVQRANSPP PPPPAQASVP SQPSSSSAPS  240
QPPILPIQSS VKSLFFGLIL SLLVPVPELP ENPPEDAPVV TQRKGHCSSS NSSSSNGSTS  300
SSVFASLFAS STTSGASLQP PQPPAFTDLI RAMGQPDLPT DLAPSASIEP ISLGLSTSHA  360
SSIFGTAGQE RRQYAPPPQP AMSATALLQK AAQMSATSNA SLLRGFGIVS SSSSSAEQES  420
MQWNQRQTES DSASIAAGLG LGLPCDGSGW KELMMGSPSM FGPKQTTLDL LGLGMAAGNN  480
PNGGLSALIT SIGGGLDVAA AAASFGSGEY SGKDLARSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35134202371Zinc finger protein JACKDAW
5b3h_F3e-35134202371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300616.10.0PREDICTED: protein indeterminate-domain 2-like isoform X1
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2P6RMK70.0A0A2P6RMK7_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004300616.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-107C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]