PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000079.1.g00014.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 220aa MW: 24092.6 Da PI: 8.4067

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000079.1.g00014.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.5	6.8e-36	70	142	4	74
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 + + ++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++++a+ c + FANhyb_rscf00000079.1.g00014.1 70 RSTNTKDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTQPAQLCtsT 142 6789**********************************************************99999877422 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-29	72	159	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.644	74	128	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGSEMALQDY LSPDPPRHHH QPILPSLKLE DLTQSVAVPT AVLHPTTTTV TTGDNSGRMT 60 AAQQLSGTRR STNTKDRHTK VNGRGRRVRM PAMCAARIFQ LTRELGHRSD GETIEWLLRH 120 AEPSIIAATG TGTQPAQLCT STPSMPVSIP SLPCRPTVTT ASAGQFIYHH LQLPVSQAHN 180 QQQQLSCRLD LCQPVDPLCL TMAIDIMVEQ FASRFVLSIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468122.1	1e-108	PREDICTED: transcription factor PCF1
TrEMBL	A0A2P6RAZ7	1e-79	A0A2P6RAZ7_ROSCH; Putative transcription factor TCP family
STRING	EMJ08854	5e-54	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-36	TCP family protein