PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000075.1.g00026.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB

Protein Properties

Length: 191aa MW: 21507.2 Da PI: 8.295

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000075.1.g00026.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.6e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l ++++++G g+W++ + g+ R++k+c++rw +yl FANhyb_rscf00000075.1.g00026.1 13 KGAWSKQEDEKLTQYIQKHGEGSWRSLPVAAGLLRCGKSCRLRWVNYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	54.4	2.9e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l FANhyb_rscf00000075.1.g00026.1 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-22	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.44	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.14E-28	12	107	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-12	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	1.23E-9	15	60	No hit	No description
PROSITE profile	PS51294	26.444	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-26	63	116	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-16	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-16	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-11	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MRKPCCEKKT TNKGAWSKQE DEKLTQYIQK HGEGSWRSLP VAAGLLRCGK SCRLRWVNYL 60 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LRRKLMHLGI 120 DPNNHRIGHN ICLNKQVNHP CKSANSQANN DDADDSDDPL LDSTSSGPES NISCSLPDLN 180 LDLTIGLPSS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-28	12	115	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299543.1	1e-137	PREDICTED: myb-related protein 308-like
Swissprot	P81393	2e-76	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2P6P1Y5	1e-129	A0A2P6P1Y5_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004299543.1	1e-137	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	6e-74	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]