PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000070.1.g00022.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

CAMTA

Protein Properties

Length: 1981aa MW: 222116 Da PI: 6.4392

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000070.1.g00022.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	103.7	1.3e-32	67	141	2	76
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76 l+ k+rwl++ ei++iL+n++k+++++e++++p+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK FANhyb_rscf00000070.1.g00022.1 67 LEAKHRWLRPAEICEILQNYKKFHISTEPASTPPGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKKT 141 6679********************************************************************843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	47.238	62	274	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.0E-42	65	269	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-27	68	141	IPR005559	CG-1 DNA-binding domain
SMART	SM00429	0.52	620	708	IPR002909	IPT domain
Gene3D	G3DSA:2.60.40.10	1.3E-5	622	708	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.33E-18	623	708	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.4E-6	623	707	IPR002909	IPT domain
PROSITE profile	PS50297	18.139	788	927	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.51E-12	803	915	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.4E-31	804	918	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.02E-16	806	917	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.217	856	888	IPR002110	Ankyrin repeat
Pfam	PF00023	0.012	856	887	IPR002110	Ankyrin repeat
SMART	SM00248	0.032	856	885	IPR002110	Ankyrin repeat
SMART	SM00248	260	895	924	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.45E-7	1016	1074	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	23	1023	1045	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	1025	1053	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0017	1046	1068	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.597	1047	1071	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	1049	1068	IPR000048	IQ motif, EF-hand binding site
SMART	SM00429	1.1	1344	1432	IPR002909	IPT domain
SuperFamily	SSF81296	2.96E-16	1346	1432	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.8E-4	1347	1431	IPR002909	IPT domain
Gene3D	G3DSA:2.60.40.10	9.9E-4	1347	1432	IPR013783	Immunoglobulin-like fold
CDD	cd00204	1.26E-11	1533	1645	No hit	No description
PROSITE profile	PS50297	15.565	1534	1657	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.4E-31	1543	1649	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.35E-15	1544	1645	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.5E-6	1558	1648	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.038	1586	1615	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	8.816	1586	1618	IPR002110	Ankyrin repeat
SMART	SM00248	480	1625	1654	IPR002110	Ankyrin repeat
SMART	SM00015	0.22	1777	1799	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.535	1778	1802	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.035	1780	1798	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1981 aa Download sequence Send to blast
MAETKRYGLG NQLGQFLLID FCIKFSSLRI FVILALVLRS ICSFLLAYLL STCRAPAVQL 60 DIQQILLEAK HRWLRPAEIC EILQNYKKFH ISTEPASTPP GGSLFLFDRK VLRYFRKDGH 120 NWRKKKDGKT VKEAHERLKK TDHFQVLMEI WVNLRLRLVC RLIKANELSS LSFLLASAEL 180 QLNLETDIRL RDDADRNFCL ENRGEESCLN VHEVGGLEVL MCCTVTMPTE KTTKIFKDAV 240 IGCLKILNPE GCLLMDLSHI VLVHYREVKG NRTNFNHVKE TEGVAYSNGA EQSARQSEME 300 NSVSSSFNPS SYQMHSQTTE ATSLSSAQAS EFEDAESAFY NQASSRLQPM AEKINSEFAD 360 AYYPTFSSKF DSFNSLSQAY KGEDSIHAGI TYEPRKDRDF ALWDDMENSA TGVQSFQPSF 420 SATHSDTMGS FPKQEIETIG HLYTDSFDKR LVYGMENRPK VQQSWQTSEG SSNWPMDQSI 480 QSHAQYNVTS KLHDGADATD LLKSWPFLMD SDKQNDLQFH LSNTDSISKR NDIIEGKADY 540 PSAIKPLLDG AFGDGLKKLD SFNRWMSKEL EDVDEPQMQS SSGAYWETVE SENEVDESSV 600 PLQVRLDSYM LGPSLSHDQL FSIVDFSPSW AYENSEIKVL ITGRFLKSQH AESCKWSCMF 660 GEVEVPAEVI ADGVLRCYTP IHKAGRVPFY VTCSNRLACS EVREFEYRVA ETQDVDCKDY 720 YSDFSNETLS MRFGNFLTLS STSPNCDPAS IAENSEVNSK ITSLLKNDND EWDKMLQLTS 780 DEDFSLKRVE EQLHQQLLKE KLHAWLLQKL AAGGKGPNVL DEGGQGVLHF GAALGYDWVL 840 LPTITAGVSV NFRDVNGWTA LHWAAFCGRE RTVASLISLG AAPGALTDPT AKYPSGETPA 900 DLASEQGHKG IAGYLAESAL SKHLESLNLD LKDGNSAEIS GAKAVSGSSR DGELTDGLSL 960 RDSLTAVCNA TQAAARIHQV FRVQSFQRKQ LKEYGGDKFG ISNERALSLI AVKSHKSGKR 1020 DEHVDAAAVR IQNKFRSWKG RKDFLIIRQR IVKIQAHVRG HQVRKNYKKI VWTVGIVEKI 1080 ILRWRRKGSG LRGFKPEPLT EGPSMQVSST KEDDDDVLKE GRKQTEERMQ KALARVKSMA 1140 QYPEARDQYR RLLNVVTEIQ ETKVLNSSEG TSAYMDDDLI DIEALFDDDV FMPTATSRLS 1200 HIVLVHYRDV KTSEGNLSCS SELSINRNVH SDTSYHASTS FPRGVNADEL LNSLGPPCHM 1260 DLIKQNESSL HRHSDNKNDP WRLKNLDSAN QCMNTDLGDL TEPHMSSSED HSNTIASENE 1320 IDGFSALKQV EIATLGSSLF QDLLFNIMDF SPNWAYERAE TKVVVVGRFL KSQELDSFNW 1380 SCMFGEVEVP AEVVADGVLR CYTPIHRAAR IPFYVTCSNR LACSEVKIFE YRVNHIQDAD 1440 FKDNCCEENT LVMRFGKLLS PSVMYPSFNP RVKHRQYDPI CVSDNSDLTR KISSLLKNGD 1500 EERAEMLKLF PDAFSLDTVK EQLLQQFLKD KFHEWLLKKL AVGGNGLRVL DEGGQGVLHI 1560 GAALGYDWVL SPMKIAGVSI NFRDVNGWTA LHWAAFCGRD RAVALLISLG GAPGALTDPC 1620 TKNPTGKTPA DLASENGYKG IAGYLAASSL SAHISSLKLD IKDAHSAESS REKSVQPDGM 1680 STHCSNGDLA DELSMRVCST AVCDPIQASA RIHQVFSVQP FQRKQLKEYG DKSKTSDEGA 1740 LSLIAVKSHK KCDEHVSCAA IQTPDKFRNR NIKDFLIIRS RILKIQANVR GHQERKSYTK 1800 ILWAVGILEK IILRWRRKRS GLRGFKREPP SDEGRSIQVS SSRENDYDFL KEGRKQTEER 1860 LQNALARVKS MVQIPEARDQ YNQLSNIFTE IQETKVVDSS EGESTDMDYN GMLQVVNNSI 1920 GISADMDYNI IDTNALLDDN ILRIRTIIIL KPFTGKVKVA KSTTINLHDK LTSLAVDGSK 1980 S

Sequence ? help Back to Top

Protein Sequence Length: 1981 aa Download sequence Send to blast

MAETKRYGLG NQLGQFLLID FCIKFSSLRI FVILALVLRS ICSFLLAYLL STCRAPAVQL  60
DIQQILLEAK HRWLRPAEIC EILQNYKKFH ISTEPASTPP GGSLFLFDRK VLRYFRKDGH  120
NWRKKKDGKT VKEAHERLKK TDHFQVLMEI WVNLRLRLVC RLIKANELSS LSFLLASAEL  180
QLNLETDIRL RDDADRNFCL ENRGEESCLN VHEVGGLEVL MCCTVTMPTE KTTKIFKDAV  240
IGCLKILNPE GCLLMDLSHI VLVHYREVKG NRTNFNHVKE TEGVAYSNGA EQSARQSEME  300
NSVSSSFNPS SYQMHSQTTE ATSLSSAQAS EFEDAESAFY NQASSRLQPM AEKINSEFAD  360
AYYPTFSSKF DSFNSLSQAY KGEDSIHAGI TYEPRKDRDF ALWDDMENSA TGVQSFQPSF  420
SATHSDTMGS FPKQEIETIG HLYTDSFDKR LVYGMENRPK VQQSWQTSEG SSNWPMDQSI  480
QSHAQYNVTS KLHDGADATD LLKSWPFLMD SDKQNDLQFH LSNTDSISKR NDIIEGKADY  540
PSAIKPLLDG AFGDGLKKLD SFNRWMSKEL EDVDEPQMQS SSGAYWETVE SENEVDESSV  600
PLQVRLDSYM LGPSLSHDQL FSIVDFSPSW AYENSEIKVL ITGRFLKSQH AESCKWSCMF  660
GEVEVPAEVI ADGVLRCYTP IHKAGRVPFY VTCSNRLACS EVREFEYRVA ETQDVDCKDY  720
YSDFSNETLS MRFGNFLTLS STSPNCDPAS IAENSEVNSK ITSLLKNDND EWDKMLQLTS  780
DEDFSLKRVE EQLHQQLLKE KLHAWLLQKL AAGGKGPNVL DEGGQGVLHF GAALGYDWVL  840
LPTITAGVSV NFRDVNGWTA LHWAAFCGRE RTVASLISLG AAPGALTDPT AKYPSGETPA  900
DLASEQGHKG IAGYLAESAL SKHLESLNLD LKDGNSAEIS GAKAVSGSSR DGELTDGLSL  960
RDSLTAVCNA TQAAARIHQV FRVQSFQRKQ LKEYGGDKFG ISNERALSLI AVKSHKSGKR  1020
DEHVDAAAVR IQNKFRSWKG RKDFLIIRQR IVKIQAHVRG HQVRKNYKKI VWTVGIVEKI  1080
ILRWRRKGSG LRGFKPEPLT EGPSMQVSST KEDDDDVLKE GRKQTEERMQ KALARVKSMA  1140
QYPEARDQYR RLLNVVTEIQ ETKVLNSSEG TSAYMDDDLI DIEALFDDDV FMPTATSRLS  1200
HIVLVHYRDV KTSEGNLSCS SELSINRNVH SDTSYHASTS FPRGVNADEL LNSLGPPCHM  1260
DLIKQNESSL HRHSDNKNDP WRLKNLDSAN QCMNTDLGDL TEPHMSSSED HSNTIASENE  1320
IDGFSALKQV EIATLGSSLF QDLLFNIMDF SPNWAYERAE TKVVVVGRFL KSQELDSFNW  1380
SCMFGEVEVP AEVVADGVLR CYTPIHRAAR IPFYVTCSNR LACSEVKIFE YRVNHIQDAD  1440
FKDNCCEENT LVMRFGKLLS PSVMYPSFNP RVKHRQYDPI CVSDNSDLTR KISSLLKNGD  1500
EERAEMLKLF PDAFSLDTVK EQLLQQFLKD KFHEWLLKKL AVGGNGLRVL DEGGQGVLHI  1560
GAALGYDWVL SPMKIAGVSI NFRDVNGWTA LHWAAFCGRD RAVALLISLG GAPGALTDPC  1620
TKNPTGKTPA DLASENGYKG IAGYLAASSL SAHISSLKLD IKDAHSAESS REKSVQPDGM  1680
STHCSNGDLA DELSMRVCST AVCDPIQASA RIHQVFSVQP FQRKQLKEYG DKSKTSDEGA  1740
LSLIAVKSHK KCDEHVSCAA IQTPDKFRNR NIKDFLIIRS RILKIQANVR GHQERKSYTK  1800
ILWAVGILEK IILRWRRKRS GLRGFKREPP SDEGRSIQVS SSRENDYDFL KEGRKQTEER  1860
LQNALARVKS MVQIPEARDQ YNQLSNIFTE IQETKVVDSS EGESTDMDYN GMLQVVNNSI  1920
GISADMDYNI IDTNALLDDN ILRIRTIIIL KPFTGKVKVA KSTTINLHDK LTSLAVDGSK  1980
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cxk_A	3e-14	623	708	9	89	calmodulin binding transcription activator 1
2cxk_B	3e-14	623	708	9	89	calmodulin binding transcription activator 1
2cxk_C	3e-14	623	708	9	89	calmodulin binding transcription activator 1
2cxk_D	3e-14	623	708	9	89	calmodulin binding transcription activator 1
2cxk_E	3e-14	623	708	9	89	calmodulin binding transcription activator 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288193.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2P6RQI8	0.0	A0A2P6RQI8_ROSCH; Putative transcription factor CG1-CAMTA family
STRING	XP_004288193.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8284	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]