PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000068.1.g00015.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 398aa    MW: 44331.3 Da    PI: 8.7286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000068.1.g00015.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.9e-11315340126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     +ktelC+ +++tG C+y d C++aHg
  FANhyb_rscf00000068.1.g00015.1 315 FKTELCNKWQETGDCPYKDHCQYAHG 340
                                     79***********************9 PP
2zf-CCCH18.34.3e-06353377125
                                     --S---SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                     ykte Cr  +++  C+yG rC+F H
  FANhyb_rscf00000068.1.g00015.1 353 YKTEVCRMVLAGDVCPYGHRCHFRH 377
                                     9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.49E-10311346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-17311347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371314342IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7314341IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-8315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8348381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11348381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821352380IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4352379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MLNLTSLIRF CGLELYRNCF LKIRILGFRI GKISAEMIGN LFVFTVELKP RMQNDVAYAT  60
ASARIGTSAM SSPQPQPYGG GYNYGGAYSS SIFGPKPSPS SSVELYGVQS DSDTSQAYRN  120
KLYQSLLVQN RQEMVNRHSL CLKRLHEVAE EADALRRENS HLRNVNVELN KQLSLLIHAS  180
IQKEIEASSS SVASQPRSPF GIVNGIRGLS IDGKSSTHEE EDLSDYSPTS DVMDNEEAEN  240
VNVERIALPK SISVRSSGYL KLPPVTAATN AAARTRIAAR SRTAKPVSAS QKVYVQGGKK  300
EEVPLELEVF NQGMFKTELC NKWQETGDCP YKDHCQYAHG VEELRPVIRH PRYKTEVCRM  360
VLAGDVCPYG HRCHFRHALT EEEKQLAGGN NKLSRPMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-20315381470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464074.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F56e-84C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2P6R1F80.0A0A2P6R1F8_ROSCH; Putative transcription factor C3H family
STRINGXP_004300951.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-84C3H family protein