PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000065.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 441aa    MW: 48978.6 Da    PI: 7.3924
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000065.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17106155155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  FANhyb_rscf00000065.1.g00004.1 106 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHSAARAYDRAAIKFRG 155
                                     78*******************......44************************998 PP
2AP245.71.7e-14198248155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ k +g
  FANhyb_rscf00000065.1.g00004.1 198 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEIEAARAYDQAAIKCHG 248
                                     89********.7******...5...334336**********99***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-16106164IPR016177DNA-binding domain
PfamPF008472.0E-10106155IPR001471AP2/ERF domain
SMARTSM003809.5E-32107169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17107163IPR001471AP2/ERF domain
PROSITE profilePS5103217.991107163IPR001471AP2/ERF domain
CDDcd000186.41E-24107162No hitNo description
CDDcd000181.23E-25198255No hitNo description
PfamPF008475.8E-10198248IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17198256IPR016177DNA-binding domain
SMARTSM003803.4E-32199262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16199256IPR001471AP2/ERF domain
PROSITE profilePS5103215.303199256IPR001471AP2/ERF domain
PRINTSPR003671.3E-5200211IPR001471AP2/ERF domain
PRINTSPR003671.3E-5238258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLDLNLNFFT SDMDTSSNDD SSSSTTLNFL DLQSDVAAEP DHHPSSDSRT IQLFPPPAKQ  60
WLGLSSASSA TYRYRAPPPP PPPPQEQMIA PLSVKKSRRG PRSRSSQYRG VTFYRRTGRW  120
ESHIWDNGKQ VYLGGFDTAH SAARAYDRAA IKFRGTEADI NFSVGDYDED IKQMSNYTKE  180
EFVQILRRQS TGFARGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD TEIEAARAYD  240
QAAIKCHGSE AVTNFNPILY DGEIEAEPNN AGMDGSLDLN LGIAPPLASE CPNENINLSS  300
FPFPLGRNDL PIHMRSRNEN SVPGFPATMR TQLPRGLMVA SAEPPLTSNM NSNFLPIHME  360
RATEKSMDAN SFRNWAWQMQ GHNDGATPMP LFSAAASSGF PSSTPPSSAA VPPLHFPNTS  420
FLQRHFSPSF TNSTPHFYCR S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305250.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ8H4435e-99AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A3S8T9590.0A0A3S8T959_FRAAN; Transcription factor AP216
STRINGXP_004305250.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-91related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]