PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000057.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 423aa    MW: 46770.6 Da    PI: 4.5572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000057.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.3e-13157179426
                                     ---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                     e C+f+++tG Ck+G++CkF+H+
  FANhyb_rscf00000057.1.g00008.1 157 EDCSFYLKTGSCKFGSNCKFNHP 179
                                     78********************9 PP
2zf-CCCH40.73.9e-13254278226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     ++++C++++rtG CkyG++Ck++H+
  FANhyb_rscf00000057.1.g00008.1 254 GERECPYYMRTGSCKYGSNCKYNHP 278
                                     789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-6151181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568153181IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6153180IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10157179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5159178IPR000571Zinc finger, CCCH-type
SMARTSM003565.8210233IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.944214234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4214233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957252280IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6252279IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11254278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6255279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5258277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MELSESLFSV VSIPPNLDSD TLNNNNNEID QVQPSDSDIG SQHSTAAERE EDRHCSCGDG  60
DVPAVVRSGP DPDAVDVDHA VSDEIRKLDL KGEVVEEEKK EEVEAEKSCN GGEIEDKSSE  120
RQSEEESNEG GENGVEVEKK GGEYNRWYQY PVRLEAEDCS FYLKTGSCKF GSNCKFNHPV  180
RRKSNNQIGT SQCLASFITM SICMFTFVDK DLSYYLRPGG CKYGKGCRYI HGKGKTPVAP  240
VEERNFLGLP IRQGERECPY YMRTGSCKYG SNCKYNHPDP TAAGGSDPPS GFGNSGPASL  300
QGGSQSSSWS APRSLNETPP YVPLMMPPSQ GVPSRNTEWN GYQAPVYLER SMPAPPPYVI  360
NNSGIETNMY KQYPQSNQVD EFPERPGQPL CSFFLRTGDL IQLPIQWSPM LLNSTCHLDN  420
MGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299182.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLA0A314UUB51e-133A0A314UUB5_PRUYE; Zinc finger CCCH domain-containing protein 43 isoform X1
STRINGXP_004299182.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.15e-72C3H family protein