PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000052.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 171aa    MW: 19160.2 Da    PI: 7.0909
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000052.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.39.3e-152987563
                                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                                    ++ +r+q+NRe+ArrsR RK++ ++eL+  v +L +eN +    ++  ++++ ++++e+
  FANhyb_rscf00000052.1.g00010.1 29 RKRKRMQSNRESARRSRMRKQQHLDELTAQVTQLRKENGQILTSINITTQHYMNVEAEN 87
                                    6789************************************9999999999888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-192589IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.9092790IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-112774No hitNo description
SuperFamilySSF579591.44E-122982No hitNo description
PfamPF001702.3E-112983IPR004827Basic-leucine zipper domain
CDDcd147028.51E-213081No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MATSSGNSSG SQLHNSGSEG DLQHAIDQRK RKRMQSNRES ARRSRMRKQQ HLDELTAQVT  60
QLRKENGQIL TSINITTQHY MNVEAENSVL KAQMAELSQR LDSLTEILNY INGNNNSNSN  120
NNGVFETELA GQLLQTGSTA ADHNSSFMMN PWNNLLYSNL PIMATADMLQ Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14148RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291844.11e-120PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L51e-45BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2P6PYV15e-85A0A2P6PYV1_ROSCH; Putative transcription factor bZIP family
STRINGXP_004291844.11e-119(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-48basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]