PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000037.1.g00019.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 349aa    MW: 39275.5 Da    PI: 7.6124
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000037.1.g00019.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.5e-1078102126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     ykt+lC +f   G C+ G++C++aHg
  FANhyb_rscf00000037.1.g00019.1  78 YKTRLCANFKN-GSCRNGENCNYAHG 102
                                     9**********.*************8 PP
2zf-CCCH23.97.3e-08140162325
                                     S---SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                                     ++lC+ f  + +C+yGdrC+F H
  FANhyb_rscf00000037.1.g00019.1 140 MKLCKKFNNGEECPYGDRCNFRH 162
                                     689******66**********88 PP
3zf-CCCH437.4e-14218244127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +kt++C+ + +tG C++G++C+FaHg+
  FANhyb_rscf00000037.1.g00019.1 218 WKTKICNKWEQTGNCPFGEKCHFAHGQ 244
                                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-1474110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-875108IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-677103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.36177104IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-778102IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896137165IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-8140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-9215245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-15215244IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788217245IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-11218244IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPVQSLYVGG SDAVNCWPPI GMNNEDQHSQ FEQQGPPFKR PRNSEEPQSN PMPYPPMNNA  60
RLPPSNAPVN RGANNIFYKT RLCANFKNGS CRNGENCNYA HGIDDIRQPP PNWQELVTVR  120
DEDRPLTGNW EDDQKIIHRM KLCKKFNNGE ECPYGDRCNF RHEEPAKFRE DSSRYRENAA  180
ISIGTTGAPM PHASSTSLEE NRPNTGINTF LVNPKPYWKT KICNKWEQTG NCPFGEKCHF  240
AHGQAGYALI LCLALWLLIS RKIELLISEL QAPGMRVEAE LMASAPISTK PQAVPINDSS  300
TLAMAAMPAA VNEEVQGKKC GFKWRGSMKI KQINRIYGDW LDDVPLVES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287352.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT813e-83C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2P6RJ480.0A0A2P6RJ48_ROSCH; Putative transcription factor C3H family
STRINGXP_004287352.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-86C3H family protein