PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000033.1.g00012.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 239aa    MW: 27089.3 Da    PI: 6.5171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000033.1.g00012.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-205099255
                             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                    +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  FANhyb_rscf00000033.1.g00012.1 50 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAAIAYDNAALKFKG 99
                                    7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-3349108IPR001471AP2/ERF domain
PfamPF008479.2E-135099IPR001471AP2/ERF domain
CDDcd000182.29E-3350108No hitNo description
SuperFamilySSF541712.09E-2250108IPR016177DNA-binding domain
PROSITE profilePS5103224.65850107IPR001471AP2/ERF domain
SMARTSM003801.5E-3850113IPR001471AP2/ERF domain
PRINTSPR003671.2E-115162IPR001471AP2/ERF domain
PRINTSPR003671.2E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSAMVSALTQ VIGNPEEDNK QVQSSPASVK DEPDRSQPVQ DQESTVRRRH YRGVRQRPWG  60
KWAAEIRDPK KAARVWLGTF ETAEDAAIAY DNAALKFKGT KAKLNFPERV QGNSSILIQG  120
SYSGTTSSGS SVSTERNRSR PALTVPHHDA PYVAPSQPQQ ESSSFPDLYQ YAQLLQSNDN  180
DFSSNYQYPP NNPFNQDYHP QFPPSTYYPS HQQQGQQDDH GQEDHEHENK NWNRRNPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2749110163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457529.11e-145PREDICTED: ethylene-responsive transcription factor ERF113
TrEMBLA0A3Q8TEE71e-148A0A3Q8TEE7_FRAAN; Transcription factor ERF89
STRINGXP_004310141.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.18e-29ERF family protein