PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000032.1.g00023.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 399aa    MW: 43212.1 Da    PI: 6.8167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000032.1.g00023.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-09424526
                                    --SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                     C+++ + G C+yGdrCkF H+
  FANhyb_rscf00000032.1.g00023.1  4 VCNYWVQ-GNCSYGDRCKFLHS 24
                                    6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-6125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-8322IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7424IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042426IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.46E-3317190IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.2E-3223305IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-53069IPR001680WD40 repeat
PfamPF004004.7E-53369IPR001680WD40 repeat
PROSITE profilePS5008214.2183778IPR001680WD40 repeat
PROSITE profilePS5029413.0793778IPR017986WD40-repeat-containing domain
PROSITE patternPS0067805670IPR019775WD40 repeat, conserved site
SMARTSM003205.1109146IPR001680WD40 repeat
SMARTSM0032016153190IPR001680WD40 repeat
SuperFamilySSF509782.46E-33218306IPR017986WD40-repeat-containing domain
SMARTSM003209.5220263IPR001680WD40 repeat
SMARTSM003201.9266303IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDKVCNYWVQ GNCSYGDRCK FLHSWSTGDC VSLLTTLEGH QNVVSGIALP SGSDKLYTGS  60
KDETVRVWDC QSGQCLGVIN LGGEVGCMIS EGPWIFVGIP NAVKAWNTQA NSEMSLSGPV  120
GQVYTMVVGN DLLFAGTQDG SILAWKFNTV TNCFEPAASL NGHTLAVVSL VVGANRLYSG  180
SMDHSIRAGQ PFDLFPSSVV MYSFRSGALK TCNIWAATQS GNLEVAYTHD EDHPLLTLCG  240
MHDSEAKPVL LCACNDNTVR LYDLPSFSER GKIFSKQEIR AIQVGPGGLF FTGDGTGQVR  300
VWKCKRNLGR HLVFVSGTSG IMRYREASCR NNSVSLGTVT EMAPGYSALS IPLHVPSSLA  360
TTEALALWHG TLWDLSKIGR DLDAVELRRE NLRSSRGSM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308123.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ11e-156C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A2P6SMU80.0A0A2P6SMU8_ROSCH; Putative transcription factor C3H family
STRINGXP_004308123.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-161C3H family protein