PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000031.1.g00037.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 335aa    MW: 37059.6 Da    PI: 9.0424
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000031.1.g00037.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.8e-27130190159
                                     ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dgy+WrKYGqK+ k+++  pr+YYrC++a +Cpvkkkv+r+  d+++++ tYeg+Hnh+
  FANhyb_rscf00000031.1.g00037.1 130 VKDGYQWRKYGQKVTKDNPlSPRAYYRCSMApTCPVKKKVQRCMLDKSILVATYEGHHNHD 190
                                     58****************9469********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-27122191IPR003657WRKY domain
PROSITE profilePS5081122.825125192IPR003657WRKY domain
SuperFamilySSF1182906.28E-23126191IPR003657WRKY domain
SMARTSM007742.2E-30130191IPR003657WRKY domain
PfamPF031061.4E-22131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEYSRCSSKE KQGDSLEADL QSVRKENEAL RFLVEAMSSK YTRLEAHLQL LRPQLQQNKS  60
PTHDDHHHHH PMTTTGSGCH DIYDPTANKR ARTTAFAHHC NHQQRPQFLV ANKTSQFLIR  120
TDSKDNTLIV KDGYQWRKYG QKVTKDNPLS PRAYYRCSMA PTCPVKKKVQ RCMLDKSILV  180
ATYEGHHNHD TLDNSNSLLL GQIISSSPSS TLVPSPRNQI LPVDFPQAAV VHGVLQSTST  240
STAAGPITMT SPLSRQEPTN LDLTLCGSKF KSNQEENTPG RGGSPVGTIS TADKTCENEK  300
IQEYVSSLTK DPNFTVALAA AVARSIRTAP SAPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181291901372WRKY transcription factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459612.10.0PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLA0A2P6PYA01e-153A0A2P6PYA0_ROSCH; Putative transcription factor WRKY family
STRINGXP_004291955.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-35WRKY DNA-binding protein 40