PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000029.1.g00010.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

AP2

Protein Properties

Length: 210aa MW: 24241.6 Da PI: 9.862

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000029.1.g00010.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.9	1e-07	121	154	1	37
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37 s y+GV+++++ grW A+I + +k +lg+f FANhyb_rscf00000029.1.g00010.1 121 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFS 154 57**************988532...5*****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	0.0012	51	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.82E-7	58	87	IPR016177	DNA-binding domain
PROSITE profile	PS51032	8.729	59	86	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-6	59	87	IPR001471	AP2/ERF domain
CDD	cd00018	1.28E-17	121	190	No hit	No description
SuperFamily	SSF54171	2.42E-9	121	192	IPR016177	DNA-binding domain
SMART	SM00380	2.0E-14	122	200	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	12.694	122	197	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.8E-5	122	154	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MISSFIHSHN ARTLIVILQQ NVQGHKLPRV HAILPLKLRS SIGYYRLLYQ KYSLHECGYD 60 KEDKAARAYD LAALKYWGPT TTTNFPVTNY EKELTEMKNM SRQEFVASLR RKSSGFSRGA 120 SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSEYYLHI YLDVIIDNQG TQEEAAEAYD 180 IAAIKFRGLN PISDHSPNPR AGIKCYMFYF

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011462333.1	4e-74	PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
Swissprot	Q6PQQ3	9e-71	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	A0A1B1J964	3e-74	A0A1B1J964_ARAHY; AP2-like ethylene-responsive transcription factor ANT-like protein (Fragment)
TrEMBL	W9QVY5	4e-73	W9QVY5_9ROSA; AP2-like ethylene-responsive transcription factor AIL5
STRING	XP_008223788.1	6e-75	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	2e-68	AINTEGUMENTA-like 5

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]