PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000025.1.g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28595.2 Da PI: 6.6728 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00028 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H FANhyb_rscf00000025.1.g00019.1 73 FECQYCFKEFANSQALGGHQNAH 95 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.47E-6 | 69 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 70 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.406 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MENTCESEDQ HGYSAGSCVD HEHKKLRLFG FELNPYKNVD ENIKAEGDES VNSSNTWKAS 60 TSSEAEQLDN KKFECQYCFK EFANSQALGG HQNAHKKERM KKKRLQLQAR KASINYYLQP 120 FQTLNHPHGS AASASWFYDP SSYVNNTEHY TLHEESQISF NPYDQNGSNE SAQVSNWYAF 180 PGAAQFPYQE LDDHSSRFTL TQTDRSGESR PVIFTKPNSA SPASTTQSSC KPLDLQLGLG 240 LPSKIRRSSR SEV |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297672.1 | 0.0 | PREDICTED: zinc finger protein 5 | ||||
TrEMBL | M5XQD4 | 1e-108 | M5XQD4_PRUPE; Uncharacterized protein | ||||
STRING | XP_004297672.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9594 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10480.1 | 2e-19 | zinc finger protein 5 |