PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000023.1.g00023.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 803aa    MW: 90857 Da    PI: 4.9863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000023.1.g00023.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.61.5e-1081625271368
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sse 76 
                                     lv+ Ll+cAeav+ +d++la++lL+++   +sp gd++qR+  +f+ +L++rl+  +  +l  +++  + + +    +e
  FANhyb_rscf00000023.1.g00023.1 162 LVHMLLACAEAVACRDTRLAESLLTQIWASVSPFGDSLQRVSYCFAMGLKSRLSLlQNVNLNGTFNNDTMDVSMiaREE 240
                                     689**************************************************99666677777777776655577899 PP

                            GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgs 154
                                     +l a++l+++++P++ f++++aN+aI +av+g+er+HiiD+++ + lQWp+Ll++LasRpegpp +lRiTg+++   ++
  FANhyb_rscf00000023.1.g00023.1 241 KLEAFQLLYQTTPYIAFGFMVANEAICQAVQGNERLHIIDLGMDHTLQWPSLLRTLASRPEGPPkKLRITGLVE--DDN 317
                                     9***********************************************************988889********..559 PP

                            GRAS 155 keeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk 232
                                       ele+  + L + A++lg+p+efn++ +  + + l++e+L++++gEal Vn++++lh+ ++es  + +    +L+++k
  FANhyb_rscf00000023.1.g00023.1 318 VFELEAGMRVLVEEASSLGIPMEFNMISEPvKPSLLTIENLDLREGEALCVNSIMHLHKYVRESRGSLK---VILQALK 393
                                     9*************************74435899***************************87776666...9****** PP

                            GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                                     +lsP v+++veq+a+hn++ F  rfle+l++ysa+fdsle++lpr+s +r+k+Er  ++ ei+n+va eg +r+erhe+
  FANhyb_rscf00000023.1.g00023.1 394 KLSPSVLTLVEQDANHNGPFFIGRFLESLHFYSAIFDSLEVSLPRNSPQRTKIERLHFADEIRNIVAFEGLNRVERHER 472
                                     ******************************************************************************* PP

                            GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                     + +Wr++l++aGF+ + l+   ++qa+++l+ ++ dgy + +e+g+l+lgWk+rp++
  FANhyb_rscf00000023.1.g00023.1 473 ADQWRRQLGRAGFQVMGLK--CTSQARMMLSVYGCDGYCLASEKGCLLLGWKGRPIM 527
                                     ***************9996..679*******************************97 PP
2GRAS191.17.2e-59614796187374
                            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                                     + l+ e+L++++gEal Vn++++lhr ++es  + +   ++L+++k+lsP v+++veq+a+hn++ Fl rfle+l++ys
  FANhyb_rscf00000023.1.g00023.1 614 SLLTKENLDLREGEALCVNSIMHLHRYVRESRGSLK---AILQALKKLSPSVLTLVEQDANHNGPFFLGRFLESLHFYS 689
                                     678899**********************87776666...9*************************************** PP

                            GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                                     a+fdsle++lpr+s +r+k+Er  ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+   ++qa+++l+ +
  FANhyb_rscf00000023.1.g00023.1 690 AIFDSLEVSLPRNSPQRTKIERLHFADEIRNIVAFEGLNRVERHERADQWRRQLGRAGFQVMGLK--CTSQARMMLSVY 766
                                     *************************************************************9996..679********* PP

                            GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     + dgy++ +e+g+l+lgWk+rp++ + aW+
  FANhyb_rscf00000023.1.g00023.1 767 GCDGYSLASEKGCLLLGWKGRPIMLAAAWQ 796
                                     *****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.49136515IPR005202Transcription factor GRAS
PfamPF035145.1E-106162527IPR005202Transcription factor GRAS
PfamPF035142.5E-56614796IPR005202Transcription factor GRAS
PROSITE profilePS5098520.946619778IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MEDFNAWLSF PIHESLNHDL AIRRFCPARL EQEQGGGEWE EILNEIEFCS PSNDSTTTPC  60
LPASEVDEFV DSIINMDHCK DVNDDYHQSL EKQQSSFDYF QDGMQTFSME DDLYGDVMMM  120
MDGDDQMEMC GTVEDFGVLD DQTSMVHSVE EVSHGVDQGL HLVHMLLACA EAVACRDTRL  180
AESLLTQIWA SVSPFGDSLQ RVSYCFAMGL KSRLSLLQNV NLNGTFNNDT MDVSMIAREE  240
KLEAFQLLYQ TTPYIAFGFM VANEAICQAV QGNERLHIID LGMDHTLQWP SLLRTLASRP  300
EGPPKKLRIT GLVEDDNVFE LEAGMRVLVE EASSLGIPME FNMISEPVKP SLLTIENLDL  360
REGEALCVNS IMHLHKYVRE SRGSLKVILQ ALKKLSPSVL TLVEQDANHN GPFFIGRFLE  420
SLHFYSAIFD SLEVSLPRNS PQRTKIERLH FADEIRNIVA FEGLNRVERH ERADQWRRQL  480
GRAGFQVMGL KCTSQARMML SVYGCDGYCL ASEKGCLLLG WKGRPIMDCP FTRQVLQSHV  540
AISQVCLNPA VLQLELLDWL SICVNELSSL LLGELVYLLW GIWKEKNNRV WNDKNGTVMD  600
IIISSMISEP VKPSLLTKEN LDLREGEALC VNSIMHLHRY VRESRGSLKA ILQALKKLSP  660
SVLTLVEQDA NHNGPFFLGR FLESLHFYSA IFDSLEVSLP RNSPQRTKIE RLHFADEIRN  720
IVAFEGLNRV ERHERADQWR RQLGRAGFQV MGLKCTSQAR MMLSVYGCDG YSLASEKGCL  780
LLGWKGRPIM LAAAWQVNNA SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5716979525377Protein SCARECROW
5b3h_D5e-5716979525377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306565.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2P6Q8A00.0A0A2P6Q8A0_ROSCH; Putative transcription factor GRAS family
STRINGXP_004306565.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-74RGA-like 1