PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon20555326_s.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SAP

Protein Properties

Length: 130aa MW: 14058.9 Da PI: 5.1367

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon20555326_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	157.5	1e-48	1	126	329	454
SAP 329 lrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyagg 404 lrnqgvvl+++e rrG++v+s+d+sn yvvv +rG+a+vrr+++ +e+crf v g q gv+gC+nggyal+++gg FANhyb_icon20555326_s.1.g00001.1 1 LRNQGVVLADDEYRRGVVVTSVDVSNGRYVVVGNRGMARVRRADTAQEMCRFMVLGaGQMGVMGCMNGGYALMCGGG 77 8***************************************************9989*************** PP SAP 405 vlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfga 454 +rvWe+e+ e yly+++e vg v a+v d+rhva+ sd+t+hl+dfga FANhyb_icon20555326_s.1.g00001.1 78 AVRVWEVERGE-YLYNFTEPVGAVSAFVCDERHVAAWGSDTTLHLWDFGA 126 *****77.***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF50998	1.02E-11	16	127	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
Gene3D	G3DSA:2.130.10.10	2.8E-9	19	124	IPR015943	WD40/YVTN repeat-like-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009908	Biological Process	flower development
GO:0030163	Biological Process	protein catabolic process
GO:0046622	Biological Process	positive regulation of organ growth
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
LRNQGVVLAD DEYRRGVVVT SVDVSNGRYV VVGNRGMARV RRADTAQEMC RFMVLGAGQM 60 GVMGCMNGGY ALMCGGGAVR VWEVERGEYL YNFTEPVGAV SAFVCDERHV AAWGSDTTLH 120 LWDFGAGAAE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305672.1	1e-86	PREDICTED: transcriptional regulator STERILE APETALA
Swissprot	Q9FKH1	1e-38	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A2P6S1F3	2e-60	A0A2P6S1F3_ROSCH; Putative transcription factor WD40-like family
STRING	XP_004305672.1	4e-86	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7687	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	6e-41	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]