PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00021337_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 184aa    MW: 20380.8 Da    PI: 9.5406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00021337_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1883133255
                               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                       +++GVr+++ +g+++AeIrdp +ng  +r++lg++ t+e+A  a+++a+ kl+g
  FANhyb_icon00021337_a.1.g00001.1  83 HFRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKLRG 133
                                       69*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-3082142IPR001471AP2/ERF domain
PROSITE profilePS5103223.59183141IPR001471AP2/ERF domain
PfamPF008471.7E-1283133IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2283142IPR016177DNA-binding domain
SMARTSM003803.1E-3683147IPR001471AP2/ERF domain
CDDcd000181.08E-2683143No hitNo description
PRINTSPR003673.8E-138495IPR001471AP2/ERF domain
PRINTSPR003673.8E-13123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAPQAALFGG DVDDIIPLFF PSSATASTCM SGFFTTENWW ESALKPEDSE TEAVSAPGED  60
VEVKLREQAR VAHEVHAPRV ARHFRGVRRR PWGKYAAEIR DPAKNGARVW LGTYETPEDA  120
GLAYDRAAFK LRGRKAKLNF PHLIGSNNVE PVRVTPKRRR SPEQSSTSTS SASEDSESPK  180
AKIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3081146368ATERF1
3gcc_A1e-3081146368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308507.11e-121PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ8L9K12e-44ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A3S8T9A61e-114A0A3S8T9A6_FRAAN; Transcription factor ERF70
STRINGXP_004308507.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]