PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00019813_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 123aa    MW: 13724.3 Da    PI: 10.4976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00019813_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.81.8e-2282123242
                                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS
                              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 
                                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+
  FANhyb_icon00019813_a.1.g00001.1  82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSR 123
                                       69*************************998**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-2373123IPR003657WRKY domain
PROSITE profilePS5081124.69676123IPR003657WRKY domain
SuperFamilySSF1182901.44E-1977122IPR003657WRKY domain
SMARTSM007742.7E-1781123IPR003657WRKY domain
PfamPF031061.1E-1883122IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MGSPTFFNKH FMSDIDHDDY NTATTSTPEN SSGSPPPPPA FNDVVYSKIA SSPKKSSRRA  60
IQKRVVSIPI KENSNTNTPP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE  120
RSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-1470122354WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295586.21e-76PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP563e-34WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A2P6Q4V82e-73A0A2P6Q4V8_ROSCH; Putative transcription factor WRKY family
STRINGXP_004295586.12e-66(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-36WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]